Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D23
         (917 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...   103   6e-21
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    53   1e-05
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    52   2e-05
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    45   0.003
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0...    44   0.004
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    40   0.089
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ...    40   0.12 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.12 
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    38   0.47 
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0...    36   1.9  
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    35   2.5  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score =  103 bits (247), Expect = 6e-21
 Identities = 46/59 (77%), Positives = 49/59 (83%), Gaps = 1/59 (1%)
 Frame = +3

Query: 627 PLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISVXCXS-XPXAGLCAQTPYT 800
           PLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISV C S  P   +C   P++
Sbjct: 49  PLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFS 107



 Score = 42.3 bits (95), Expect = 0.017
 Identities = 27/59 (45%), Positives = 30/59 (50%)
 Frame = +1

Query: 544 PLXEHHKIDAQVRXXETRQXYKDTXXFXPWKLPXALSCSDPAAYRIPVXLSPFGKRGAF 720
           PL    KIDAQVR  ETRQ YKDT  F P + P       P   R+P    PF  R A+
Sbjct: 22  PLTSITKIDAQVRGGETRQDYKDTRRF-PLEAPSCALLFRPC--RLPDTCPPFSLREAW 77


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 52.8 bits (121), Expect = 1e-05
 Identities = 28/47 (59%), Positives = 32/47 (68%)
 Frame = +2

Query: 218 INKLTTTIAFILCFRFRGEVWEVFSALMNRPTRGERRFAYWALFRFL 358
           +++LT      L  RF      V +ALMNRPTRGERRFAYWALFRFL
Sbjct: 1   MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYWALFRFL 47


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 52.4 bits (120), Expect = 2e-05
 Identities = 24/32 (75%), Positives = 24/32 (75%)
 Frame = -2

Query: 493 PFAGLXLTCSFLRYPLILWITVLPPLSELIPL 398
           P     LTCSF  YPLILWITVLPPLSEL PL
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPL 50


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 44.8 bits (101), Expect = 0.003
 Identities = 23/37 (62%), Positives = 23/37 (62%)
 Frame = +1

Query: 361 LTDXXXXXXXXXXXXXXHSKAVIRLSTESGDNAGKNM 471
           LTD              HSKAVIRLSTESGDNAGKNM
Sbjct: 23  LTDSLRSVVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_UPI00015C640B Cluster: hypothetical protein
           CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
           Citrobacter koseri ATCC BAA-895
          Length = 99

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = -2

Query: 793 GVCAHSPAXGXDXHXTEIPTA*AMRKR-HASRREKGGQVSGKRQGRNRRAXEGASRGXTX 617
           GV A+SPA       +   ++ +  K     + +K  QVSGKRQGRNRRA EGA+ G   
Sbjct: 27  GVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQVSGKRQGRNRRAHEGAA-GEKS 85

Query: 616 WYLYXPVGFR 587
                PVGFR
Sbjct: 86  PASLSPVGFR 95


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 39.9 bits (89), Expect = 0.089
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +1

Query: 100 DMIRYIDEFGQTTTRMQ 150
           DMIRYIDEFGQTTTRMQ
Sbjct: 348 DMIRYIDEFGQTTTRMQ 364


>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides capillosus ATCC 29799|Rep: Putative
           uncharacterized protein - Bacteroides capillosus ATCC
           29799
          Length = 37

 Score = 39.5 bits (88), Expect = 0.12
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +2

Query: 662 TLPLTGYLSXFLPSGSVAL 718
           TLPLTGYLS FLPSGSVAL
Sbjct: 7   TLPLTGYLSAFLPSGSVAL 25


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.5 bits (88), Expect = 0.12
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = -1

Query: 344 APNTQTASPRALADSLMQ 291
           APNTQTASPRALADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 37.5 bits (83), Expect = 0.47
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +2

Query: 362 SLTRCARSFGCGERYQLT 415
           SLTR ARSFGCGERY+LT
Sbjct: 41  SLTRYARSFGCGERYRLT 58


>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
           CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
           Citrobacter koseri ATCC BAA-895
          Length = 125

 Score = 35.5 bits (78), Expect = 1.9
 Identities = 23/47 (48%), Positives = 25/47 (53%)
 Frame = +1

Query: 577 VRXXETRQXYKDTXXFXPWKLPXALSCSDPAAYRIPVXLSPFGKRGA 717
           VR  ETRQ  K         LP ALSCS+PA  RIPV   PF   G+
Sbjct: 23  VRSGETRQDLK-IITVSDESLPLALSCSNPAVSRIPV--PPFSLAGS 66


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 35.1 bits (77), Expect = 2.5
 Identities = 22/49 (44%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 323 RRFAYWALFRF--LXSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 460
           R  A W L     L S TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 274 RSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 636,512,615
Number of Sequences: 1657284
Number of extensions: 10660060
Number of successful extensions: 23106
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 22504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23096
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84031265255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)