Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D23
         (917 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi...    29   4.3  
At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo...    29   5.7  
At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)            28   7.5  
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)            28   7.5  

>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
           PF00076 RNA recognition motif
          Length = 636

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2

Query: 739 PTA*AMRKRHASRREKGGQVSGKRQGRNRRAXEGASRG 626
           P   A R RH+ R  +GG+ S  R  R R +  GA RG
Sbjct: 571 PARGAPRGRHSDRAPRGGRFS-DRAPRGRHSDRGAPRG 607


>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase family protein /
           heavy-metal-associated domain-containing protein similar
           to cadmium efflux pump protein from Geobacillus
           stearothermophilus [GI:16753175], cadmium resistance
           protein B from Staphylococcus aureus [GI:14020985];
           T20K24.13 has been merged with T20K24.12 per suggestion
           of Dr. Kristian Axelsen (axe@biobase.dk)
          Length = 1172

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 188 IASQISQIKHFFHCILVVVCPNSSMYLIMSDPITLXKGRSAAA 60
           +  ++  +KH+FH  LVV+       LI+S P+      + AA
Sbjct: 335 VIMKVHNLKHWFHLALVVLVSGCPCGLILSTPVATFCALTKAA 377


>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 305 RPTRGE--RRFAYWALFRFLXSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEX 478
           RPTR +  RR  Y A   F+    R  R    G +  + +   YG P NQG+TQ +    
Sbjct: 41  RPTRPDKARRLGYKAKQGFVVYRVRVRRG---GRKRPVPKGIVYGKPTNQGVTQLKFQRS 97

Query: 479 KAS 487
           K S
Sbjct: 98  KRS 100


>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 305 RPTRGE--RRFAYWALFRFLXSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEX 478
           RPTR +  RR  Y A   F+    R  R    G +  + +   YG P NQG+TQ +    
Sbjct: 41  RPTRPDKARRLGYKAKQGFVVYRVRVRRG---GRKRPVPKGIVYGKPTNQGVTQLKFQRS 97

Query: 479 KAS 487
           K S
Sbjct: 98  KRS 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,752,963
Number of Sequences: 28952
Number of extensions: 235815
Number of successful extensions: 479
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)