Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D22
         (1691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     30   4.8  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              30   4.8  

>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 24/81 (29%), Positives = 26/81 (32%)
 Frame = +2

Query: 1049 HSXHAAXXPPPSRSXPXAXAPTQPLXXVXXXVATPLTXXXNXLQAPXXSMLIARXXLXXX 1228
            HS H +  PPP RS      P          +A P T     L AP              
Sbjct: 199  HSRHGSAPPPPERS-SGPPPPPPGRGPSQRSLAPPPTGSSRPLPAPPPG--------ENR 249

Query: 1229 PPPPXXXDLSXGLXTPPHTXP 1291
            PPPP     S G   PP   P
Sbjct: 250  PPPPMRGPTSGGEPPPPKNAP 270


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 30.3 bits (65), Expect = 4.8
 Identities = 24/81 (29%), Positives = 26/81 (32%)
 Frame = +2

Query: 1049 HSXHAAXXPPPSRSXPXAXAPTQPLXXVXXXVATPLTXXXNXLQAPXXSMLIARXXLXXX 1228
            HS H +  PPP RS      P          +A P T     L AP              
Sbjct: 111  HSRHGSAPPPPERS-SGPPPPPPGRGPSQRSLAPPPTGSSRPLPAPPPG--------ENR 161

Query: 1229 PPPPXXXDLSXGLXTPPHTXP 1291
            PPPP     S G   PP   P
Sbjct: 162  PPPPMRGPTSGGEPPPPKNAP 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,082,475
Number of Sequences: 59808
Number of extensions: 251163
Number of successful extensions: 835
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 16,821,457
effective HSP length: 86
effective length of database: 11,677,969
effective search space used: 5570391213
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)