Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D19
         (856 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20852| Best HMM Match : PC_rep (HMM E-Value=1.8e-13)               211   5e-55
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              32   0.68 
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)                  31   1.6  
SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)         31   1.6  
SB_25491| Best HMM Match : Peptidase_M50 (HMM E-Value=2.2)             29   3.6  
SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)                  29   3.6  
SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)                     29   3.6  
SB_24482| Best HMM Match : KID (HMM E-Value=0.045)                     29   3.6  
SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86)              29   3.6  
SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)                   29   4.8  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_43863| Best HMM Match : FLO_LFY (HMM E-Value=1.5)                   29   6.4  
SB_51677| Best HMM Match : DUF327 (HMM E-Value=0.89)                   29   6.4  
SB_14304| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_531| Best HMM Match : wnt (HMM E-Value=0)                           28   8.4  
SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)                28   8.4  
SB_46466| Best HMM Match : Neur_chan_memb (HMM E-Value=4.8)            28   8.4  

>SB_20852| Best HMM Match : PC_rep (HMM E-Value=1.8e-13)
          Length = 638

 Score =  211 bits (516), Expect = 5e-55
 Identities = 111/230 (48%), Positives = 150/230 (65%), Gaps = 5/230 (2%)
 Frame = +1

Query: 109 KMTVKNKTDEPKKEKAEPAVAPNDDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLS 288
           K T K    +  K K EP      +LSEEDK LQEEL MLV++L    V L+ PAL+ L 
Sbjct: 10  KKTEKESKKDEAKAKDEPKREEEVELSEEDKLLQEELTMLVERLKERNVSLHKPALEALR 69

Query: 289 NLIRTSTTSMTSVPKPLKFLREHYPALKQVYEKITDEKTKKFCADVISVLAMGVSGTLEV 468
           + IR ST+SMTSVPKPLKFLR HY ++K+VY+   D + K+F AD+ISVLAM       V
Sbjct: 70  SQIRASTSSMTSVPKPLKFLRPHYASMKEVYQGWPDGENKRFLADIISVLAM-------V 122

Query: 469 AEKRECLKYCLLGTLSNVGDWGHEYVRQLEGEIAEEWNIE-----NMDSLLPLVRDVITF 633
           +E RECL++ +LG+  ++  WGHEYVR L  EI  E+         ++ L+ L +++I +
Sbjct: 123 SEGRECLQFRMLGSKESLESWGHEYVRHLSEEIRAEYGERLCKEITIEQLVGLAQEIIPY 182

Query: 634 DMKHSAXIQACXLLMEIDRLDLLTQHMDQSNYPRVCLYLIGCASXVVEPE 783
           +M+H+A   AC LLMEI+RLDLL  + D++N+ RVCLYL  C + V EPE
Sbjct: 183 NMQHNAETDACDLLMEIERLDLLEGYTDKNNFQRVCLYLTSCVNYVPEPE 232


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +1

Query: 181 DLSEEDKRLQEELNMLVDKLLGNEV--DLYFPALQMLSNLIRTSTTSMTSVPKPLKFLRE 354
           D   ++KRLQ+ELNM+  +LL  E   +     L   +N+I T  +   ++ K ++ LR+
Sbjct: 110 DSKGDNKRLQDELNMVRRRLLEKETENESLLRELNSKNNIISTLKSEKMALQKEIETLRQ 169


>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
          Length = 2072

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 36/172 (20%), Positives = 72/172 (41%), Gaps = 13/172 (7%)
 Frame = +1

Query: 85   IKRKR*VNKMTVKNKTDEPKKEKAEPAVAPNDDLSEEDKRLQE---------ELNMLVDK 237
            +K++R  NK+  K K +E  +E  E      + + +++KRLQE           N + +K
Sbjct: 1199 VKKER--NKL--KQKYEELTEEDEEEDAIYEETIEKQNKRLQELKEEVENLKRKNGIEEK 1254

Query: 238  LLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH-YPALKQVYEKIT-DEKTKK 411
             L ++++     L+    ++       T      +   E     +  + +K+   E+ K+
Sbjct: 1255 RLRDDINKLSETLEKEKRMVNQLKNEATEQKNDFRRSEEESLNEINNLKDKLNLVEREKQ 1314

Query: 412  FCADVISVLAMGVSGTLEVAEK--RECLKYCLLGTLSNVGDWGHEYVRQLEG 561
              AD I+ L+      +   E+   E  K C       +  W +EY R+++G
Sbjct: 1315 RLADDINALSFQKENLVARYEEIVAEAQKVCSEANKQEIERWKNEYKRRIDG 1366


>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
          Length = 1491

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 25/97 (25%), Positives = 43/97 (44%)
 Frame = +1

Query: 121 KNKTDEPKKEKAEPAVAPNDDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIR 300
           +NKT E     A P++  N D   + +   EEL +   KL+  E +       + S  ++
Sbjct: 475 RNKTGESGGFDAHPSLRDNKDEDPKVEEAYEELKIKYSKLV-KEQENARGENGVASPHVK 533

Query: 301 TSTTSMTSVPKPLKFLREHYPALKQVYEKITDEKTKK 411
            S     S+   +K L +    LK+  E +  EKT++
Sbjct: 534 QSLYESESMKGKIKDLEDEVRYLKERLEDMAKEKTRR 570


>SB_25491| Best HMM Match : Peptidase_M50 (HMM E-Value=2.2)
          Length = 771

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +1

Query: 226 LVDKLLGNEVDLYF---PALQMLSNLIRTSTTSMTSVPKPLKFLREH 357
           L+ K +G  V   F   PAL+ + NL++ S++ ++  P  ++  +EH
Sbjct: 7   LLQKTIGVTVGAQFQTDPALEFVKNLLQVSSSRLSDDPNIIRLAKEH 53


>SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)
          Length = 492

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
 Frame = +1

Query: 172 PNDDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPL--KF 345
           P D L    K   E  ++ +D LL + V   F   + +S+++ TS    TS  K +  K 
Sbjct: 282 PCDVLDAMLKAADEHGDITLDDLLDDFVTAIFIGQEQVSSVL-TSVLLETSRHKGIQEKL 340

Query: 346 LREHYPALKQVYEKITDEKTKKFCADVI 429
           + E    LKQ    + D K+ K+C  VI
Sbjct: 341 VEEFNSVLKQDRPTLQDLKSLKYCDLVI 368


>SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)
          Length = 317

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 24/112 (21%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
 Frame = +1

Query: 382 EKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGHEYVRQL-- 555
           EK T++  +K C  V    A+ +   L+++ K   +   L+ T+++  ++ + + R L  
Sbjct: 87  EKWTEDVVQKLCTIVD---ALPIEDVLKLSSK---VVAKLINTIASTAEFSYPHARALIA 140

Query: 556 --EGEIAEE---WNIENMDSLLPLVRDVITFDMKHSAXIQACXLLMEIDRLD 696
             + EI ++   W+++ + S+   ++D    D+K     Q   LL  + ++D
Sbjct: 141 KVKAEIGDDVKTWSVDQLKSVGKFLKDFDVKDLKQLVDQQFKTLLSTLGKMD 192


>SB_24482| Best HMM Match : KID (HMM E-Value=0.045)
          Length = 1714

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 24/72 (33%), Positives = 35/72 (48%)
 Frame = +1

Query: 121 KNKTDEPKKEKAEPAVAPNDDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIR 300
           KNKT+E KK      +    +LSE +  L+     +V +L    V    P L + S   R
Sbjct: 629 KNKTNEEKKSTKPKVINVPMNLSEAE--LKTMRKKMVLELKRKSVSGELP-LMLSSFESR 685

Query: 301 TSTTSMTSVPKP 336
            ST+S +S+P P
Sbjct: 686 RSTSSASSIPSP 697


>SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86)
          Length = 427

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/74 (28%), Positives = 41/74 (55%)
 Frame = +1

Query: 400 KTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGHEYVRQLEGEIAEEW 579
           ++ K CADV   ++ G++ ++  +E     K+     L+  GD+  E  R+LEG +A + 
Sbjct: 130 RSHKNCADVYIKISTGIA-SMGTSEYTGLDKF-----LNKTGDY-FERARKLEGRVASDE 182

Query: 580 NIENMDSLLPLVRD 621
           +++ +D L   +RD
Sbjct: 183 DLKMVDLLRYYMRD 196


>SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)
          Length = 1065

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 560  PSNCLTYSCPQSPTFDNVPRRQYFKHSLFSATSRV 456
            PSN LT   P SP    VP++Q    SL++   R+
Sbjct: 900  PSNLLTICTPGSPEKSLVPKQQIRLRSLWTGNERI 934


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +1

Query: 88   KRKR*VNKMTVKNKTDEPKKEKAEPAV-APNDDLSEEDKRLQEELNMLVDKLLGNEVDLY 264
            KRKR V K  V  + D+  K +  P   +PN    +ED  +  + N   +       ++Y
Sbjct: 1365 KRKRTVGKNKVDKEKDKMNKRRKHPKQRSPNFLPVDEDTNMAWDNNYAYEDYEEAVENIY 1424

Query: 265  FPALQMLSNLIRTSTTSMTSVPK 333
               L+ L   ++  +T+  SVP+
Sbjct: 1425 SKELEDLVLSVKDDSTNGVSVPE 1447


>SB_43863| Best HMM Match : FLO_LFY (HMM E-Value=1.5)
          Length = 592

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +1

Query: 142 KKEKAEPAVAPNDDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLI 297
           KK+K +   A   D  ++++R QEE N  V   L +E D +FP+    S  I
Sbjct: 80  KKKKDKERWAQLIDKLKDEQRRQEEHNQCVMSWLKHERDSWFPSKSTKSETI 131


>SB_51677| Best HMM Match : DUF327 (HMM E-Value=0.89)
          Length = 655

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +1

Query: 142 KKEKAEPAVAPNDDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLI 297
           KK+K +   A   D  ++++R QEE N  V   L +E D +FP+    S  I
Sbjct: 452 KKKKDKERWAQLIDKLKDEQRRQEEHNQCVMSWLKHERDSWFPSKSTKSETI 503


>SB_14304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1219

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 611 SGNSESMFSIFHSSAISPSNCLTYSCPQSP-TFDNVPRRQYFKHSL 477
           SG     FS+FHSS +     + ++       FD+  RRQ  +H+L
Sbjct: 288 SGELHGSFSLFHSSDVWSLGVVLFAMVTGRFPFDDQDRRQLLRHTL 333


>SB_531| Best HMM Match : wnt (HMM E-Value=0)
          Length = 646

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -3

Query: 629 VITSRTSGNSESMFSIFHSSAISPSNCLTYSCPQSPTFDN 510
           V+ S   G S ++F   H     P NC T    +SP F N
Sbjct: 300 VMDSVKDGASVALFECQHQFRYRPWNCTTVQFSRSPVFGN 339


>SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)
          Length = 496

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 82  LIKRKR*VNKMTVKNKTDEPKKEKAEPAVAPNDDLSEEDKRLQEE 216
           L KRK    K   K K  + KK+K E     ND   EE K+ ++E
Sbjct: 6   LEKRKSLPRKEKEKEKDKKGKKKKGEQNGENNDSAKEESKKNKKE 50


>SB_46466| Best HMM Match : Neur_chan_memb (HMM E-Value=4.8)
          Length = 498

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
 Frame = -3

Query: 632 NVITSRTSGNSESMFSIFHSSAISPSNCLTYS---C--PQSPTFDNVPRRQYFKHSLFSA 468
           N + +R SG    +    HS+++S S   + S   C  P +  F +  ++    HSL + 
Sbjct: 126 NALEARISGEGTPISMSNHSASLSSSTASSSSFPPCGVPSNTPFSSSTQKPANAHSLKTM 185

Query: 467 TSRVPLTPIAKTEITSAQNFFVFSSVI 387
           TS +  + +   EI  A+   + S+ I
Sbjct: 186 TSLIGTSTLTSGEIAGAEPCTLDSAAI 212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,439,732
Number of Sequences: 59808
Number of extensions: 455133
Number of successful extensions: 1437
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)