Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D18
         (949 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26860.2 68415.m03223 F-box family protein contains F-box dom...    31   1.1  
At2g26860.1 68415.m03222 F-box family protein contains F-box dom...    31   1.1  
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    31   1.5  
At3g61680.1 68416.m06912 lipase class 3 family protein contains ...    29   4.5  

>At2g26860.2 68415.m03223 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 355

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 627 KYWLYLVLWILKYTLLFSHQGNELPTDEF 541
           K W +L LW+ K T + +H  ++LP  +F
Sbjct: 32  KRWEFLWLWVPKLTFVMNHYESDLPIQDF 60


>At2g26860.1 68415.m03222 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 405

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 627 KYWLYLVLWILKYTLLFSHQGNELPTDEF 541
           K W +L LW+ K T + +H  ++LP  +F
Sbjct: 32  KRWEFLWLWVPKLTFVMNHYESDLPIQDF 60


>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 311 LIIDKXRNTMEYCYKLWVGNGQEIVRKYFPLNF 409
           +++D      EY  KL + +G +   KYFPL F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418


>At3g61680.1 68416.m06912 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 649

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +2

Query: 650 NCNSRXRVVYGGNSADSTREQWFFQPAKYEN-DVLFFIYNRQFNDALELGYES*TPREXA 826
           N  +R  V+ G +S  S +   FF+P K+E+ DVL    +R   +A +  YE   P E  
Sbjct: 349 NTYTRCFVIQGSDSLASWKANLFFEPTKFEDTDVL---VHRGIYEAAKGIYEQFLP-EIT 404

Query: 827 RXLDTXGEXRRVFLTSXS 880
             L   G+  +   T  S
Sbjct: 405 EHLSRHGDRAKFQFTGHS 422


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,612,006
Number of Sequences: 28952
Number of extensions: 310149
Number of successful extensions: 714
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2275754832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)