Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_D17
(905 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g45610.1 68416.m04926 Dof-type zinc finger domain-containing ... 32 0.45
At3g26240.1 68416.m03274 DC1 domain-containing protein contains ... 30 1.8
At1g47655.1 68414.m05294 Dof-type zinc finger domain-containing ... 30 1.8
At5g17500.1 68418.m02053 glycosyl hydrolase family 5 protein / c... 29 3.2
At2g02630.1 68415.m00202 DC1 domain-containing protein contains ... 29 3.2
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 29 3.2
At1g21326.1 68414.m02666 VQ motif-containing protein contains PF... 29 3.2
At5g05680.1 68418.m00625 nuclear pore complex protein-related co... 29 5.6
At5g37620.1 68418.m04531 DC1 domain-containing protein contains ... 28 7.4
At2g27200.1 68415.m03269 GTP-binding family protein contains Pfa... 28 7.4
At5g60200.1 68418.m07546 Dof-type zinc finger domain-containing ... 28 9.8
At5g37850.1 68418.m04557 pfkB-type carbohydrate kinase family pr... 28 9.8
At4g01760.1 68417.m00229 DC1 domain-containing protein similar t... 28 9.8
>At3g45610.1 68416.m04926 Dof-type zinc finger domain-containing
protein identical to dof6 zinc finger protein GI:5689615
from [Arabidopsis thaliana]
Length = 245
Score = 32.3 bits (70), Expect = 0.45
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -2
Query: 421 DVQPSRSPRTPCRYLPPGTRVRCP---SIARPPCGWSGYSAPAPRSQRPSCRR 272
D Q + P + R PP +RCP S C ++ YS PR SCRR
Sbjct: 20 DYQNQKKPLSATRPAPPEQSLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRR 72
>At3g26240.1 68416.m03274 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 922
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = -3
Query: 276 EGCDCVLDDDEAHGPRQVRHVHRDQTVPLLF---TDDVAIGCYFCEKRAESERE-YNC 115
E CD L A P+QVR+ H +PL + T D+ C CE + E Y C
Sbjct: 764 EECDYALCFKCATLPQQVRYKHDKHILPLSYGKKTSDMTYWCEACEGKINPEEGFYRC 821
>At1g47655.1 68414.m05294 Dof-type zinc finger domain-containing
protein
Length = 209
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -2
Query: 418 VQPSRSPRTPCRYLPPGTRVRCPSIARPPCGWSGYSAPAPRSQRPSCRR 272
VQPS + P P RC S C ++ Y+ PR SCRR
Sbjct: 13 VQPSTAAYPPPNLAEPLPCPRCNSTTTKFCYYNNYNLAQPRYYCKSCRR 61
>At5g17500.1 68418.m02053 glycosyl hydrolase family 5 protein /
cellulase family protein predicted protein F3F19.15 -
Arabidopsis thaliana, EMBL:AC007357
Length = 526
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = -1
Query: 209 GIKPSHCFLLTTSQSAAISVRSELRASASTTAEWRRAMSRSGACQHVSTRAXC*IL*GI 33
G+K + +S+R+ELR T+ +W + M + H S IL G+
Sbjct: 183 GLKKMATIFMNVKNVVGMSLRNELRGYNHTSKDWYKYMQKGAEAVHTSNPNVLVILSGL 241
>At2g02630.1 68415.m00202 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 440
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -3
Query: 273 GCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFCEKRAESEREYNC 115
GCD +L + A PR+ H + L+F +D C C R + Y C
Sbjct: 193 GCDFILHETCADAPRRKVHPLHPHPLKLIFYEDNCFHCKAC-WRTSTAFGYRC 244
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -2
Query: 412 PSRSPRTPCRYLPPGTRVRCPSIARPPCGWSGYSAPAPRSQRPS 281
PS SP P Y P V CP + P P+PR PS
Sbjct: 552 PSPSPPPPYIYSSPPPVVNCPPTTQSPPPPKYEQTPSPREYYPS 595
>At1g21326.1 68414.m02666 VQ motif-containing protein contains
PF05678: VQ motif
Length = 239
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = -2
Query: 454 GPRVVPVGVRADV-----QPSRSPRTPCRYLPPGTRVRCPSIARPPCG 326
GPR +P+ VR D +P +P P + PP T + PS +RPP G
Sbjct: 13 GPRPIPLKVRGDSHKIIKKPPLAPPHP-QPQPPQTHQQEPSQSRPPPG 59
>At5g05680.1 68418.m00625 nuclear pore complex protein-related
contains weak similarity to Nuclear pore complex protein
Nup88 (Nucleoporin Nup88) (88 kDa nuclear pore complex
protein) (Swiss-Prot:Q99567) [Homo sapiens]
Length = 810
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 160 AADCDVVSKKQWDGLIPVHVS 222
+ +C V K WD L+P+HVS
Sbjct: 545 SGECIVAEMKTWDLLLPIHVS 565
>At5g37620.1 68418.m04531 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -3
Query: 306 QLLAASVRPAEGCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFC 151
Q+L+ + C+ L A+ PR+ HV+R+ LL + + C+ C
Sbjct: 409 QILSEPFYSCKQCNFKLHQKCANHPRKKHHVYRNLPFTLLTSGNEIFQCWLC 460
>At2g27200.1 68415.m03269 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 537
Score = 28.3 bits (60), Expect = 7.4
Identities = 20/82 (24%), Positives = 33/82 (40%)
Frame = -3
Query: 309 HQLLAASVRPAEGCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFCEKRAESE 130
H+ + SV D +++ +A ++ +H D P+ D G A+
Sbjct: 35 HKKVLESVTEVSDIDAIIE--QAEEAERLFAIHHDSATPVPINMDT--GSSSSGITAKEW 90
Query: 129 REYNCRVEAGHVEERRVPARQH 64
+E R EA H +VP R H
Sbjct: 91 KEQRMREEALHASSLQVPRRPH 112
>At5g60200.1 68418.m07546 Dof-type zinc finger domain-containing
protein similar to dof6 zinc finger protein GI:5689615
from [Arabidopsis thaliana]
Length = 257
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = -2
Query: 415 QPSRSPRTPC-RYLPPGTRVRCP---SIARPPCGWSGYSAPAPRSQRPSCRR 272
Q SP T R PP +RCP S C ++ YS PR SCRR
Sbjct: 36 QKKPSPATAVTRPQPPELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRR 87
>At5g37850.1 68418.m04557 pfkB-type carbohydrate kinase family
protein contains Pfam profile: PF00294 pfkB family
carbohydrate kinase
Length = 309
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -3
Query: 321 LDIPHQLLAASVRPAEGCDCVLDDD-EAHGPRQVRHVHRDQTVPL 190
L++ ++L + + CD V+ D+ + + P ++ HV+R++ VPL
Sbjct: 106 LEVINKLRSVNPNLTYVCDPVMGDEGKLYVPEELVHVYREKVVPL 150
>At4g01760.1 68417.m00229 DC1 domain-containing protein similar to
T15B16.10 similar to A. thaliana CHP-rich proteins
encoded by T10M13, GenBank accession number AF001308
Length = 667
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -3
Query: 309 HQLLAASVRPAEGCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFCEK 145
H + S CD +L + A PR+ HV ++ + L+ ++ GC C K
Sbjct: 411 HPISPQSFYGCMDCDFILHQNCAGFPRRKWHVLHNERLALVTSEVNIFGCSACHK 465
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,907,502
Number of Sequences: 28952
Number of extensions: 285204
Number of successful extensions: 1065
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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