Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D12
         (887 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02425.1 68417.m00328 expressed protein                             35   0.083
At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identic...    31   1.4  
At2g16630.1 68415.m01909 proline-rich family protein contains pr...    29   4.1  
At1g16260.1 68414.m01947 protein kinase family protein contains ...    29   4.1  
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    29   5.4  
At5g01790.1 68418.m00098 expressed protein                             28   9.5  
At1g21230.1 68414.m02653 wall-associated kinase, putative simila...    28   9.5  

>At4g02425.1 68417.m00328 expressed protein 
          Length = 262

 Score = 34.7 bits (76), Expect = 0.083
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = +1

Query: 136 NAEVYGPSDYAEDYSISGQSSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNRE 312
           + E++G +++A D S + ++SRR  RD   +K+  GG  FG      D +  ++GY  E
Sbjct: 141 SGELFGEANWASDVSEAARNSRRERRDSGGEKEASGG--FG-FANGVDPMGNESGYGSE 196


>At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identical
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           pathogen infection (PMID:10380805)
          Length = 735

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +1

Query: 190 QSSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYG-TRV 366
           Q   +H +D    +Q       G L Q   G  G +  + +IF +D  K     Y  +R+
Sbjct: 356 QQRMKHLKDTKLREQFFEQNGGGMLTQRLSGA-GPSNVDVKIFTEDGMKKATNGYAESRI 414

Query: 367 LGPGGDSTNYGGRL 408
           LG GG  T Y G L
Sbjct: 415 LGQGGQGTVYKGIL 428


>At2g16630.1 68415.m01909 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 359

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -1

Query: 296 AFPKSPSSFCPKVP--KTLPPP 237
           A P  PSSFCPK P    +PPP
Sbjct: 139 AQPVQPSSFCPKPPTAPVMPPP 160


>At1g16260.1 68414.m01947 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 262 LGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGGRLDWG 417
           L Q    L G     +   ++D    T +   +R+LG GG  T Y G L+ G
Sbjct: 361 LQQQTSFLHGSVNRTKVFSSNDLENATDRFNASRILGQGGQGTVYKGMLEDG 412


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 319 NDDRGKLTG--QAYGTRVLGPGGDSTNYGGR 405
           N+DRG   G    YG R  G GG  + YGGR
Sbjct: 52  NNDRGGYGGANSGYGGRGQGYGGRGSGYGGR 82


>At5g01790.1 68418.m00098 expressed protein 
          Length = 188

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 299 PAFPKSPSSFCPKVPKTLPPP 237
           P  PK PSS  P +P   PPP
Sbjct: 63  PGTPKHPSSELPTLPPLTPPP 83


>At1g21230.1 68414.m02653 wall-associated kinase, putative similar
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           salicylic acid or INA (PMID:10380805)
          Length = 733

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +1

Query: 190 QSSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYG-TRV 366
           Q   RH ++    +Q       G L Q   G  G +  + +IF ++  K     Y  +R+
Sbjct: 355 QQKMRHRKNTELRQQFFEQNGGGMLIQRLSGA-GPSNVDVKIFTEEGMKEATDGYNESRI 413

Query: 367 LGPGGDSTNYGGRL 408
           LG GG  T Y G L
Sbjct: 414 LGQGGQGTVYKGIL 427


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,741,311
Number of Sequences: 28952
Number of extensions: 361460
Number of successful extensions: 941
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)