Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D07
         (1025 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    58   5e-07
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    39   0.18 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    34   5.2  

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 57.6 bits (133), Expect = 5e-07
 Identities = 31/59 (52%), Positives = 35/59 (59%)
 Frame = +3

Query: 255 RIHFMFXVQAEVWDCXXCXNESAXARGEAVCVLXALPLPRSLTRCARSFGCGXPVSXHS 431
           R+H  F  + + W    C  + A AR EAV VL ALPL RS TRC RS GCG  VS HS
Sbjct: 251 RVHCPFSTR-DTWRAS-CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHS 307


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 39.1 bits (87), Expect = 0.18
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = +3

Query: 330 RGEAVCVLXALPLPRSLTRCARSFGCG 410
           R   +C    +PLPRSLTR ARSFGCG
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCG 52


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 34.3 bits (75), Expect = 5.2
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = -2

Query: 358 AXNTQTASPRALADSXMQ 305
           A NTQTASPRALADS MQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 499,236,035
Number of Sequences: 1657284
Number of extensions: 5747232
Number of successful extensions: 11110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11057
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 97980318480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)