Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D06
         (917 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim...    29   4.3  
At1g15730.1 68414.m01887 PRLI-interacting factor L, putative str...    29   5.7  
At4g31070.1 68417.m04411 pentatricopeptide (PPR) repeat-containi...    28   7.5  

>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
           similar to PRLI-interacting factor L [Arabidopsis
           thaliana] GI:11139268; contains Pfam profile PF02492:
           Cobalamin synthesis protein/P47K
          Length = 444

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = -3

Query: 543 NEAGGVRALDNSYVVG--V*EHSLVHVDSGVACCFVETFKIFGIIEQLEQRDGFFPHFFV 370
           NE G V  +D S V    +    +V +++G  CC V    +  I E +  + G F H  +
Sbjct: 123 NEFGEVD-IDGSLVASKSIGAEDIVMLNNGCLCCTVRGDLVRMIGELVNTKKGKFDHIVI 181

Query: 369 KDSRIPNFLGRNPTLYIIHEIF 304
           + + + N      T Y   EIF
Sbjct: 182 ETTGLANPAPIIQTFYAEEEIF 203


>At1g15730.1 68414.m01887 PRLI-interacting factor L, putative strong
           similarity to PRLI-interacting factor L GI:11139268 from
           [Arabidopsis thaliana]; contains Pfam profile PF02492:
           Cobalamin synthesis protein/P47K
          Length = 448

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = -3

Query: 543 NEAGGVRALDNSYVVG--V*EHSLVHVDSGVACCFVETFKIFGIIEQLEQRDGFFPHFFV 370
           NE G V  +D S V         ++ +++G  CC V    +  I E ++ + G F H  +
Sbjct: 126 NEFGEVD-IDGSLVAAQTAGAEDIMMLNNGCLCCTVRGDLVRMISEMVQTKKGRFDHIVI 184

Query: 369 KDSRIPNFLGRNPTLYIIHEIF 304
           + + + N      T Y   EIF
Sbjct: 185 ETTGLANPAPIIQTFYAEDEIF 206


>At4g31070.1 68417.m04411 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 613

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 578 FVNMEVKNKMDYVKMMDGCLEREN 649
           F  MEVKN++ +  M+ GC+  +N
Sbjct: 208 FDQMEVKNEVSWTAMISGCVANQN 231


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,958,649
Number of Sequences: 28952
Number of extensions: 291657
Number of successful extensions: 736
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)