Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_D04
(910 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0) 145 4e-35
SB_17097| Best HMM Match : F-box (HMM E-Value=3.8) 32 0.56
SB_15167| Best HMM Match : F-box (HMM E-Value=3.8) 32 0.56
>SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)
Length = 224
Score = 145 bits (352), Expect = 4e-35
Identities = 83/151 (54%), Positives = 94/151 (62%), Gaps = 4/151 (2%)
Frame = +1
Query: 469 LSFDKDASIAKAXN-LSFIC*TWY*KEX-FXKLASTWEGFKQPRVGEEAWN-HCNLTLLF 639
LSFD +AS+AKA + KE KL+STWEG + R+ E HCNLTLLF
Sbjct: 2 LSFDVEASVAKALKFIELYKEAGISKERVLIKLSSTWEGIQAARILERDHGIHCNLTLLF 61
Query: 640 SLYQAIACAEANVTLISPFVGRILDWYVEHT-KKTYEGQEDPGVVSVTXXXXXXXXXXXX 816
+ QA+ACAEA VTLISPFVGRI DWYV T +K YE EDPGV SVT
Sbjct: 62 AFVQAVACAEAGVTLISPFVGRIYDWYVAKTGQKEYEPHEDPGVKSVTAIYNYYKKFGYK 121
Query: 817 TXVMGASFRNTGEIRELXGCDLLTXSPKLLQ 909
T VMGASFRN G+I L GCD LT SP LL+
Sbjct: 122 TVVMGASFRNVGQITGLTGCDKLTISPSLLE 152
>SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)
Length = 408
Score = 32.3 bits (70), Expect = 0.56
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +3
Query: 156 VP*NQTLNQHSTWLWQILGEFEAMKEYKAYR-----CYYKSKLNTLCCWVWKQYQHILG* 320
+P LN S W ++ + YK+Y C YKS LN L W++K Y ++L
Sbjct: 16 LPYKSYLNALSYWPYKSYLNALSYWPYKSYLNALSYCPYKSYLNVLSYWLYKSYLNVL-- 73
Query: 321 SY*IWK 338
SY ++K
Sbjct: 74 SYWLYK 79
Score = 32.3 bits (70), Expect = 0.56
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +3
Query: 159 P*NQTLNQHSTWLWQILGEFEAMKEYKAYR-----CYYKSKLNTLCCWVWKQYQHIL 314
P LN S WL++ + YK+Y C YKS LN L W +K Y ++L
Sbjct: 173 PYKSYLNVLSYWLYKSYLNVLSYWPYKSYLNVLSYCPYKSYLNVLSYWPYKSYLNVL 229
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +3
Query: 159 P*NQTLNQHSTWLWQILGEFEAMKEYKAYR-----CYYKSKLNTLCCWVWKQYQHIL 314
P LN S W ++ + YK+Y C YKS LN L W++K Y ++L
Sbjct: 137 PYKSYLNALSYWPYKSYLNALSYCPYKSYLNVLSYCPYKSYLNVLSYWLYKSYLNVL 193
Score = 29.9 bits (64), Expect = 3.0
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +3
Query: 174 LNQHSTWLWQILGEFEAMKEYKAYR-----CYYKSKLNTLCCWVWKQYQHIL 314
LN S WL++ + +K+Y C YKS LN L W +K Y ++L
Sbjct: 70 LNVLSYWLYKSFLNVLSYWLFKSYLNALSYCPYKSYLNVLLYWPYKSYLNVL 121
Score = 29.9 bits (64), Expect = 3.0
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +3
Query: 159 P*NQTLNQHSTWLWQILGEFEAMKEYKAYR-----CYYKSKLNTLCCWVWKQYQHIL 314
P LN S W ++ + YK+Y C YKS LN L W +K Y ++L
Sbjct: 221 PYKSYLNVLSYWPYKSYPNALSYWPYKSYLNVLSYCPYKSYLNVLSYWPYKSYLNVL 277
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +3
Query: 159 P*NQTLNQHSTWLWQILGEFEAMKEYKAYR-----CYYKSKLNTLCCWVWKQYQHIL 314
P LN S W ++ + YK+Y C YKS LN L W +K Y ++L
Sbjct: 257 PYKSYLNVLSYWPYKSYLNVLSYCPYKSYLNVLSYCPYKSYLNVLSYWPYKSYLNVL 313
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +3
Query: 159 P*NQTLNQHSTWLWQILGEFEAMKEYKAYR-----CYYKSKLNTLCCWVWKQYQHIL 314
P LN S W ++ + YK+Y C YKS LN L W +K Y ++L
Sbjct: 293 PYKSYLNVLSYWPYKSYLNVLSYWPYKSYLNVLSYCPYKSYLNVLSYWPYKSYLNVL 349
Score = 28.7 bits (61), Expect = 6.9
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +3
Query: 174 LNQHSTWLWQILGEFEAMKEYKAYR---CY--YKSKLNTLCCWVWKQYQHIL 314
LN S WL++ + YK+Y Y YKS LN L W++K Y ++L
Sbjct: 82 LNVLSYWLFKSYLNALSYCPYKSYLNVLLYWPYKSYLNVLLYWLYKSYLNVL 133
>SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)
Length = 392
Score = 32.3 bits (70), Expect = 0.56
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +3
Query: 159 P*NQTLNQHSTWLWQILGEFEAMKEYKAYR-----CYYKSKLNTLCCWVWKQYQHIL 314
P LN S WL++ + YK+Y C YKS LN L W +K Y ++L
Sbjct: 157 PYKSYLNVLSYWLYKSYLNVLSYWPYKSYLNVLSYCPYKSYLNVLSYWPYKSYLNVL 213
Score = 31.9 bits (69), Expect = 0.74
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 159 P*NQTLNQHSTWLWQILGEFEAMKEYKAYR-----CYYKSKLNTLCCWVWKQYQHILG*S 323
P LN S W ++ + YK+Y C YKS LN L W++K Y ++L S
Sbjct: 1 PYKSYLNALSYWPYKSYLNALSYWPYKSYLNALSYCPYKSYLNVLSYWLYKSYLNVL--S 58
Query: 324 Y*IWK 338
Y ++K
Sbjct: 59 YWLYK 63
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +3
Query: 159 P*NQTLNQHSTWLWQILGEFEAMKEYKAYR-----CYYKSKLNTLCCWVWKQYQHIL 314
P LN S W ++ + YK+Y C YKS LN L W++K Y ++L
Sbjct: 121 PYKSYLNALSYWPYKSYLNALSYCPYKSYLNVLSYCPYKSYLNVLSYWLYKSYLNVL 177
Score = 29.9 bits (64), Expect = 3.0
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +3
Query: 174 LNQHSTWLWQILGEFEAMKEYKAYR-----CYYKSKLNTLCCWVWKQYQHIL 314
LN S WL++ + +K+Y C YKS LN L W +K Y ++L
Sbjct: 54 LNVLSYWLYKSFLNVLSYWLFKSYLNALSYCPYKSYLNVLLYWPYKSYLNVL 105
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +3
Query: 159 P*NQTLNQHSTWLWQILGEFEAMKEYKAYR-----CYYKSKLNTLCCWVWKQYQHIL 314
P LN S W ++ + YK+Y C YKS LN L W +K Y ++L
Sbjct: 205 PYKSYLNVLSYWPYKSYLNVLSYCPYKSYLNVLSYCPYKSYLNVLSYWPYKSYLNVL 261
Score = 29.5 bits (63), Expect = 3.9
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +3
Query: 159 P*NQTLNQHSTWLWQILGEFEAMKEYKAYR-----CYYKSKLNTLCCWVWKQYQHIL 314
P LN S W ++ + YK+Y C YKS LN L W +K Y ++L
Sbjct: 277 PYKSYLNVLSYWPYKSYLNVLSYWPYKSYLNVLSYCPYKSYLNVLSYWPYKSYLNVL 333
Score = 28.7 bits (61), Expect = 6.9
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +3
Query: 174 LNQHSTWLWQILGEFEAMKEYKAYR---CY--YKSKLNTLCCWVWKQYQHIL 314
LN S WL++ + YK+Y Y YKS LN L W++K Y ++L
Sbjct: 66 LNVLSYWLFKSYLNALSYCPYKSYLNVLLYWPYKSYLNVLLYWLYKSYLNVL 117
Score = 28.3 bits (60), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 249 CYYKSKLNTLCCWVWKQYQHIL 314
C YKS LN L W +K Y ++L
Sbjct: 264 CPYKSYLNVLSYWPYKSYLNVL 285
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,789,414
Number of Sequences: 59808
Number of extensions: 539540
Number of successful extensions: 1154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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