Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D04
         (910 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12230.1 68414.m01415 transaldolase, putative similar to Swis...    67   2e-11
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)...    29   3.2  
At5g06300.1 68418.m00706 lysine decarboxylase family protein con...    28   7.4  
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil...    28   9.8  
At2g28305.1 68415.m03435 expressed protein contains Pfam profile...    28   9.8  

>At1g12230.1 68414.m01415 transaldolase, putative similar to
           Swiss-Prot:P30148 transaldolase B (EC 2.2.1.2)
           [Escherichia coli O157:H7]
          Length = 405

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 7/164 (4%)
 Frame = +1

Query: 439 GRVSVES*CRLSFDKDASIAKAXNLSFIC*TWY*KEX--FXKLASTWEGFKQPRVGEEAW 612
           GRVS E   RL++D +  I K  +L  +             K+ +TW+G +  R+ E   
Sbjct: 160 GRVSTEVDARLAYDTNGIIRKVHDLLRLYNEIDVPHDRLLFKIPATWQGIEAARLLESEG 219

Query: 613 NHCNLTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHTKKT-----YEGQEDPGVVSV 777
              ++T ++S  QA A ++A  ++I  FVGR+ DW   H+  T      +  EDPG+  V
Sbjct: 220 IQTHMTFVYSFAQAAAASQAGASVIQIFVGRLRDWARNHSGDTEIESAIKSGEDPGLALV 279

Query: 778 TXXXXXXXXXXXXTXVMGASFRNTGEIRELXGCDLLTXSPKLLQ 909
                        + +M A+ RN  ++  L G D +    K+LQ
Sbjct: 280 KRSYNYIHKYGYKSKLMAAAVRNKQDLFSLLGVDYVIAPLKVLQ 323


>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
           identical to GB:CAA09207, contains a DEAD/DEAH box
           family ATP-dependent helicas signature; identical to
           cDNA DEAD box RNA helicase, RH17 GI:3776008
          Length = 609

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +2

Query: 587 SQELEKKHGI--IVILHCCSLCTKLLPVLKQMLH*YHHLLVVYWIGMLNIQRRLMRARK 757
           S ++++ HG   +VI+    LC ++   L+++LH +H ++  Y +G     +   R RK
Sbjct: 96  SPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRK 154


>At5g06300.1 68418.m00706 lysine decarboxylase family protein
           contains Pfam profile PF03641: lysine decarboxylase
           family
          Length = 165

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 262 PSLILSAAGYGNSISTFLDKAIKYG 336
           P  +L+  GY NS+ TF+DKA+  G
Sbjct: 84  PVGLLNVDGYYNSLLTFIDKAVDEG 108


>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
           protein / CHD family protein similar to chromatin
           remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
           GI:6478518; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain, PF00628: PHD-finger, PF00385:
           'chromo' (CHRromatin Organization MOdifier)
          Length = 2228

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 177 NQHSTWLWQILGEFEAMKEYKAYRCYYKSKLNTLCCWVWKQYQHIL 314
           N H+TW+ +   +  A ++ + Y+  Y + +  +C   WKQ Q I+
Sbjct: 548 NIHNTWISEAELKGLAKRKLENYKAKYGTAVINICEDKWKQPQRIV 593


>At2g28305.1 68415.m03435 expressed protein contains Pfam profile
           PF03641: decarboxylase family protein
          Length = 213

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 262 PSLILSAAGYGNSISTFLDKAIKYG 336
           P  +L+  GY NS+ +F+DKA++ G
Sbjct: 135 PVGLLNVEGYYNSLLSFIDKAVEEG 159


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,937,433
Number of Sequences: 28952
Number of extensions: 392352
Number of successful extensions: 936
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)