Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D03
         (879 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)...    72   6e-13
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)...    72   6e-13
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative     71   8e-13
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)...    71   1e-12
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)...    71   1e-12
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)       71   1e-12
At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co...    38   0.009
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid...    28   9.5  

>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 71.7 bits (168), Expect = 6e-13
 Identities = 32/60 (53%), Positives = 44/60 (73%)
 Frame = +2

Query: 137 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 316
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60


>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 71.7 bits (168), Expect = 6e-13
 Identities = 32/60 (53%), Positives = 44/60 (73%)
 Frame = +2

Query: 137 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 316
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60


>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
          Length = 111

 Score = 71.3 bits (167), Expect = 8e-13
 Identities = 33/59 (55%), Positives = 42/59 (71%)
 Frame = +2

Query: 140 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 316
           +S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK  E  N+ DLI
Sbjct: 1   MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLI 59


>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 32/60 (53%), Positives = 43/60 (71%)
 Frame = +2

Query: 137 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 316
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60


>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 32/60 (53%), Positives = 43/60 (71%)
 Frame = +2

Query: 137 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 316
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60


>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
          Length = 113

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/60 (53%), Positives = 43/60 (71%)
 Frame = +2

Query: 137 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 316
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60


>At3g49460.1 68416.m05406 60S acidic ribosomal protein-related
           contains weak similarity to Swiss-Prot:52855 60S acidic
           ribosomal protein P1 (L12) [Zea mays]
          Length = 46

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 20/45 (44%), Positives = 30/45 (66%)
 Frame = +2

Query: 140 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGL 274
           ++  ELAC Y+AL+L D    VT   +ST++K A +++E YWP L
Sbjct: 1   MATGELACTYAALLLHDH---VT---MSTLVKTANLNIESYWPSL 39


>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
           [Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
           Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
          Length = 324

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 288 KALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 181
           +  +N P  + S  TAA  KM +I SP+T +S   R
Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGSSGEIR 317


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,367,572
Number of Sequences: 28952
Number of extensions: 191126
Number of successful extensions: 454
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)