Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_D01
         (923 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.00 
SB_35309| Best HMM Match : VWA (HMM E-Value=9.70007e-41)               30   2.3  
SB_55895| Best HMM Match : ig (HMM E-Value=2.2e-05)                    30   3.0  
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              30   3.0  
SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_34713| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.0  
SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)                 29   7.0  
SB_9683| Best HMM Match : RCSD (HMM E-Value=2.8)                       28   9.3  
SB_23502| Best HMM Match : MAM (HMM E-Value=0)                         28   9.3  

>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 31.5 bits (68), Expect = 1.00
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
 Frame = +3

Query: 255 RETIEWKHHRGYRQQSHQRRQ*ECFRVRLQTVDRGG*GNRQTLLPXFSLDRCYPRATSRS 434
           R+TI  +H R  +QQ H R   +    R     R    ++Q   P  S  + YPR   + 
Sbjct: 195 RDTINNRHPRPSQQQRHPRPSQQQRHPRPSQQQRYPRPSQQQRQPRPSQQQRYPRHNQQQ 254

Query: 435 S--TRETI-LP---SNSVLRQTQITTESHTAMPTTRAART 536
           +  T+ T  +P   S + + +TQ TTE+     TT   +T
Sbjct: 255 TPETQSTTEIPETQSTTEIPETQSTTETPETQSTTETPKT 294


>SB_35309| Best HMM Match : VWA (HMM E-Value=9.70007e-41)
          Length = 409

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 323 FLLPSLMRLLTVSSMMLPLDCFSSSRIR 240
           F +P+++R+   S +   L CF SSRIR
Sbjct: 354 FRVPAMIRICVTSELKFNLPCFQSSRIR 381


>SB_55895| Best HMM Match : ig (HMM E-Value=2.2e-05)
          Length = 420

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = -3

Query: 306 DEIVDGILDDASTRLFLEQQNQRNSRVVIGSGDSIDEPRFRSGRSGQNVNVQVNKTGAGR 127
           +E  + ++  A+  +   Q    +S   +G GDS++ P  RS ++G N  + V+    GR
Sbjct: 164 EETGEQVVSRAAINVIAFQAQGSSSSREVGQGDSLNLPNVRSNQTG-NYTITVSNQYGGR 222

Query: 126 QHA 118
             A
Sbjct: 223 ASA 225


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = -2

Query: 727 PGVELSGLQVPL-VSVRVSAIISINAMVVFTIRTRSKFQVLVPTNTVDLEVNPVVLPERN 551
           P  E  G+  PL  S R    + ++  ++ TI TRS  +  +  +     V     PE  
Sbjct: 377 PDSEAVGVSYPLETSEREKEFVDVHGRIIKTIITRSVIRTWIVFDEKGNHVQDTNAPESE 436

Query: 550 QLPAD 536
           +LP D
Sbjct: 437 ELPTD 441


>SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 371 SSNTTSLXQFRQVLSESNVKIINKRDNLAIKLGAAADSDNDRIAYGDA-NDKSSENVSW 544
           SS+ T++ +       +   +INK DN +IK   AAD+  D++ + D+ N+   +  +W
Sbjct: 316 SSHVTTVSRVLCARPNTMELVINKGDNNSIKYLLAADTKADKVTWLDSLNEALKDYKAW 374


>SB_34713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 623 GTGTDGENDHSVYGDDRADT 682
           G  TD E DHSV+GDD + T
Sbjct: 167 GHCTDHEKDHSVHGDDTSPT 186


>SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)
          Length = 312

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 414 PRATSRSSTRETILPSNSVLRQTQITTESHTAMPTT 521
           P A + SST  T  P+  V    Q +TE+ T  PTT
Sbjct: 79  PTAKTTSSTSSTSKPTEDVGTSPQPSTENETHTPTT 114


>SB_9683| Best HMM Match : RCSD (HMM E-Value=2.8)
          Length = 232

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +3

Query: 414 PRATSRS-STRETILPSNSVLRQTQITTESHTAMPTTR 524
           P + S++ STRET+  ++ ++  +  TT SH  MPTT+
Sbjct: 128 PASKSQTLSTRETV--ASEIMPTSTRTTTSHVVMPTTQ 163


>SB_23502| Best HMM Match : MAM (HMM E-Value=0)
          Length = 407

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 635 DGENDHSVYGDDRADTHRHQWYLKPAKLDTRS 730
           D +  +  +  D +DT+R+QWY++  +  +R+
Sbjct: 88  DFDKSYCSWTQDHSDTNRYQWYVERGRTPSRN 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,882,001
Number of Sequences: 59808
Number of extensions: 474783
Number of successful extensions: 1530
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2681370225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)