Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C21
         (1012 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31829| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.068
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            31   1.9  
SB_8177| Best HMM Match : TSP_1 (HMM E-Value=6e-38)                    30   3.4  
SB_59480| Best HMM Match : ZU5 (HMM E-Value=2.4e-38)                   29   4.5  
SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)                        29   4.5  
SB_9661| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.9  

>SB_31829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 35.5 bits (78), Expect = 0.068
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = +1

Query: 349 QLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQXKKVGMAPFYQLLVGSMVFFYA 528
           + KL   G +  R +   +   G  SR W  ++ KYV  K   M PF+  +  +    YA
Sbjct: 6   ETKLKNAGDYVVRNASLENMWRG-MSRVWNSYRAKYVTCKNARMTPFWHAVFVAAALNYA 64

Query: 529 INYGRI 546
           I Y  +
Sbjct: 65  IEYNHL 70


>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 373 SWFGRRSKTPSAVAGAFSRAWWRWQHKYV 459
           SW  RRS   S     FS  +WRW H++V
Sbjct: 489 SW-SRRSAATSLDTKTFSIEYWRWHHRFV 516


>SB_8177| Best HMM Match : TSP_1 (HMM E-Value=6e-38)
          Length = 950

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
 Frame = -3

Query: 449 CCHLHQARLKAPATADGVLLRRPN----HEPISFSFNWAEWEYQVFHSXRGRESLRAP-X 285
           C  L + RL+ P   DG  +  PN        S SF   E E  V ++ +G  + + P  
Sbjct: 331 CMGLGEERLECPTPTDGCSVHIPNRPDQENAASDSFIALECETNVKYNAKGSHASKVPSA 390

Query: 284 VTRPREFINFPLG 246
           V    +FI  PLG
Sbjct: 391 VYSLFDFIRAPLG 403


>SB_59480| Best HMM Match : ZU5 (HMM E-Value=2.4e-38)
          Length = 903

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 296 LTIPCPAYYGKPDTPIQPS 352
           +TIPCP Y G+ +  IQPS
Sbjct: 455 VTIPCPVYSGQSNPDIQPS 473


>SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 864

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 385 RRSKTPSAVAGAFSRAWWRWQHKYVQXKKVGMAPFY 492
           RRS   S     FS  +WRW H++       +  FY
Sbjct: 785 RRSAATSLDTKTFSIEYWRWHHRFYSGSTATIRIFY 820


>SB_9661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = -1

Query: 544 FFHS*WHRRRPCCQRVVGRME-PCQPS*XVRTYVAISTRLD*KLRPRQTESCCGDRTTNR 368
           +F S   RRRP  +RVVG ++  C+     R   A  TR    +  R T+    + T N+
Sbjct: 348 YFESPLGRRRPPGRRVVGLLDASCRNGNRRRELAAAFTRTP-AVNQRATDPHATESTDNQ 406

Query: 367 FRSASTGLNGSIRFSIVXGAG 305
            +   T  + ++   +V G G
Sbjct: 407 SKITKTITDAAVITGLVAGIG 427


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,039,135
Number of Sequences: 59808
Number of extensions: 352912
Number of successful extensions: 595
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 2999920429
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)