Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C20
         (863 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)              296   1e-80
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.69 
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)               30   2.1  
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               29   4.9  

>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
          Length = 260

 Score =  296 bits (727), Expect = 1e-80
 Identities = 137/160 (85%), Positives = 149/160 (93%)
 Frame = +3

Query: 135 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 314
           N M+ L IRKL LNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI+
Sbjct: 2   NPMKELRIRKLVLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIS 61

Query: 315 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 494
           VHCTVRG KAEEILE+GLKV+EYEL +  FSATGNFGFGIQEHIDLGIKYDPSIGIYG+D
Sbjct: 62  VHCTVRGPKAEEILEKGLKVKEYELVKGCFSATGNFGFGIQEHIDLGIKYDPSIGIYGMD 121

Query: 495 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQK 614
           F+VVLGRPGFN++ R+ K G+VGFPHRLTK+DAMKWFQQK
Sbjct: 122 FFVVLGRPGFNISKRKHKQGRVGFPHRLTKDDAMKWFQQK 161


>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 225 TPWRHESACHRIHQHRCSSKAF*YEDSALHF*NYPSEPSSPFYLSST 85
           T  R +S   R  + RCS+K+  +   A HF N+   P  PFY S T
Sbjct: 565 TSRRFQSRPQRCPRRRCSNKSLSFVGRA-HFSNFRVTPKMPFYRSMT 610


>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 196 VTG*LVPPRCWSNSQDNSLYFP 261
           VT  LVPP  W+ SQD  +Y+P
Sbjct: 742 VTPPLVPPMPWTGSQDAGMYYP 763


>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
          Length = 379

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = -2

Query: 430 PKPKLPVAEKL-SRRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIPKDRT 275
           P P++P +  L S + S S  +KP+SRI ++L+  ++Q   ++  + +P+  T
Sbjct: 149 PLPRIPTSPSLVSLQVSPSYPYKPVSRIPTSLSLVSLQAPPLYPYKPLPRIST 201


>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 403

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
 Frame = -2

Query: 430 PKPKLPVAEKLSRRNSYSL-TFKPLSRISSALAPRTVQWTAIF---SLRRIPKDRTVYLA 263
           P P++P +  L    +  L T+KPL RIS++L+  ++Q +  +    L RIP D ++ ++
Sbjct: 303 PLPRIPTSLSLVSLQAPPLYTYKPLPRISTSLSLVSLQASPSYPYKPLPRIPSDLSL-VS 361

Query: 262 LENTGCCPVSCSNTLAARVSLSP 194
           L+     P S    L  R+  SP
Sbjct: 362 LQ----APPSYPYKLLPRIPTSP 380


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,735,114
Number of Sequences: 59808
Number of extensions: 450350
Number of successful extensions: 1076
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)