Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C18
         (904 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)                    31   1.7  
SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)                    29   3.9  
SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                29   5.1  
SB_9094| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.8  
SB_5270| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.8  
SB_22160| Best HMM Match : Arc (HMM E-Value=7.5)                       28   9.0  

>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
          Length = 334

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 183 EAWLRRKSHEELGMSGRAREQP*HVQDEHEP 275
           EAWL RK H E  +S   RE+   V+++H+P
Sbjct: 223 EAWLERKEHREDSLSEHEREE---VKNKHKP 250


>SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)
          Length = 283

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 190 GFEENLMRNWVCLVEHESSRDTSKTN 267
           GFEE + R W+   + E S D +KTN
Sbjct: 33  GFEEEVKRQWIGCDKLEGSNDITKTN 58


>SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1145

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = -3

Query: 257 DVSRLLSCSTRHTQFLMRFSSK-PCFL--SSCTRPHLVNVLASEPTQRTTKAKIINFCIS 87
           D  +   C++   Q L+    K PC     SC +  + +V A E  Q TT AK ++ C S
Sbjct: 98  DQRKAKCCNSGEHQSLISEDEKLPCLSVKKSCFKEGIASVPAKETDQVTTTAKDVSDCCS 157

Query: 86  IRILSS 69
            + L S
Sbjct: 158 NKNLKS 163


>SB_9094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 510

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 22/78 (28%), Positives = 35/78 (44%)
 Frame = +1

Query: 187 HGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGASPGKDCNVK 366
           H  +   +++W+  +  E  RDT+      N      + ++N+  W  K     K  +VK
Sbjct: 53  HEADPVAVKSWLKKLSEEQFRDTADKYLRPNNCSHVVVPKVNEEIW-GKLTRQVKTKDVK 111

Query: 367 CSDLLTDDITKAAKCAKK 420
            S L T +ITKA   A K
Sbjct: 112 FSRLQT-NITKAGHIAVK 128


>SB_5270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -3

Query: 164 PHLVNVLASEPTQRTTKAKIINFCIS---IRILSSYSN*MIKFLRD 36
           P L+ + A EP  +T+ AK++   ++    R++ S  +  IKFLRD
Sbjct: 382 PQLLTIAAFEPVAQTSDAKVVLELLTNLESRLMHSDYDKQIKFLRD 427


>SB_22160| Best HMM Match : Arc (HMM E-Value=7.5)
          Length = 246

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +1

Query: 118 VVLCVGSEAKTFTRCGLVHELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYG 297
           VV   G  + + +   +   L++ GF  +L  + V  +   +S    K    RNG K   
Sbjct: 41  VVKVTGGRSNSSSHEDVAQSLKRSGFLYDLTESSV--IPTATSATYRKFRLKRNGMKKTE 98

Query: 298 LFQINDRYWCS 330
            F+   R WCS
Sbjct: 99  FFKYLRRKWCS 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,252,393
Number of Sequences: 59808
Number of extensions: 310560
Number of successful extensions: 695
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)