Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C18
         (904 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33985.1 68417.m04822 expressed protein                             30   1.8  
At4g21850.2 68417.m03160 methionine sulfoxide reductase domain-c...    30   1.8  
At4g21850.1 68417.m03159 methionine sulfoxide reductase domain-c...    30   1.8  

>At4g33985.1 68417.m04822 expressed protein
          Length = 154

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 153 HEMRSRA*AEEAWLRRKSHEELGMSGRAR 239
           H     A  EEAWLR+K  + LG  GR++
Sbjct: 19  HSWSPDADREEAWLRKKGKQSLGRLGRSK 47


>At4g21850.2 68417.m03160 methionine sulfoxide reductase
           domain-containing protein / SeIR domain-containing
           protein low similarity to pilin-like transcription
           factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
           methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
           {Neisseria gonorrhoeae}; contains Pfam profile PF01641:
           SelR domain
          Length = 121

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 376 LLTDDITKAAKCAKKIYKRH-RFDAWYGWKNHCQXLPGLI 492
           L  D I   A CA  +YK   +FD+  GW +    +PG I
Sbjct: 50  LFDDGIYSCAGCATPLYKSTTKFDSGCGWPSFFDAIPGAI 89


>At4g21850.1 68417.m03159 methionine sulfoxide reductase
           domain-containing protein / SeIR domain-containing
           protein low similarity to pilin-like transcription
           factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
           methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
           {Neisseria gonorrhoeae}; contains Pfam profile PF01641:
           SelR domain
          Length = 143

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 376 LLTDDITKAAKCAKKIYKRH-RFDAWYGWKNHCQXLPGLI 492
           L  D I   A CA  +YK   +FD+  GW +    +PG I
Sbjct: 50  LFDDGIYSCAGCATPLYKSTTKFDSGCGWPSFFDAIPGAI 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,331,223
Number of Sequences: 28952
Number of extensions: 212265
Number of successful extensions: 584
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)