Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C17
         (1081 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10900| Best HMM Match : I-set (HMM E-Value=0)                       30   3.7  
SB_45589| Best HMM Match : Peptidase_A17 (HMM E-Value=1.1e-11)         29   4.9  
SB_9085| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   8.6  
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          29   8.6  

>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1642

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 237  PRLXNVLNLKVQFKPKXPPGPSRKNSVNSKXPXSFP 130
            P   N LN  +  + K PP P RKN+  S+    FP
Sbjct: 1454 PSHLNDLNHPLSLQDKTPPFPERKNTTASEVSIEFP 1489


>SB_45589| Best HMM Match : Peptidase_A17 (HMM E-Value=1.1e-11)
          Length = 293

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 513 WNQEVAPNLKKGWYSASGGLXGPCVP 590
           WN EV+ ++KK W+  +G L    +P
Sbjct: 205 WNDEVSESIKKAWFKWTGQLRNVKIP 230


>SB_9085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 498 KXSXWWNQEVAPNLKKGWYSASGGLXGPCVP 590
           K    WN EV+ + KK W+  +G L    +P
Sbjct: 519 KEKRGWNDEVSESTKKAWFKWTGQLRNVKIP 549


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 17/38 (44%), Positives = 18/38 (47%)
 Frame = +3

Query: 549 WYSASGGLXGPCVPWLLGNXXCETTSMMPKTVQINSST 662
           W S SGG       WL G     TT     TVQI+SST
Sbjct: 186 WISGSGGTTS----WLTGPSTDHTTGTAQGTVQISSST 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,147,586
Number of Sequences: 59808
Number of extensions: 616140
Number of successful extensions: 1488
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3272640468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)