Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C16
         (884 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51968| Best HMM Match : PT (HMM E-Value=0.54)                       32   0.71 
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1)                 29   6.6  

>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
          Length = 514

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +1

Query: 538 QPEDSKRAVAEPTETTPTNVSREEMEFTTESXVRDVDVGLETAQK 672
           +PE+ +RA   PT+  PT + R   E  T+   + +   +E+A++
Sbjct: 358 EPEEEERATPRPTKAKPTTIKRRPTERPTKKPTKPLLPEVESAEE 402



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = +1

Query: 478 RPAGLRERRVE---KSPSR*X--QKQPEDSKRAVAEPTETTPTNVSREEMEFTTESXVR 639
           +P  ++ R  E   K P++    + +PE+ +RA   PT+  PT + R   E  T+   +
Sbjct: 170 KPTTIKRRPTERPTKKPTKPLLPEVEPEEEERATPRPTKAKPTTMKRRPTERPTKKPTK 228



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +1

Query: 475 RRPAGLRERRVEKSPSR*XQKQPEDSKRAVAEPTETTPTNVSREEMEFTTESXVR 639
           RRP     ++  K      +++ E+ +R   +PT+  PT + R   E  T+   +
Sbjct: 419 RRPTERPTKKTTKPLLPEEEEEEEEEERPTPKPTKAKPTTIKRRPTEIPTKKPTK 473



 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +1

Query: 478 RPAGLRERRVEKSPSR*XQKQPEDSKRAVAEPTETTPTNVSREEMEFTTESXVR 639
           +P    +RR  + P++    + E+ +R    PT+  PT + R   E  T+   +
Sbjct: 135 KPKTTVKRRPTERPTKSLLPEEEEKERQTPTPTKAKPTTIKRRPTERPTKKPTK 188



 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = +1

Query: 478 RPAGLRERRVE---KSPSR*X--QKQPEDSKRAVAEPTETTPTNVSREEMEFTTESXVR 639
           +P  ++ R  E   K P++    + +PE+ ++A   PT+  PT + R   E  T+   +
Sbjct: 210 KPTTMKRRPTERPTKKPTKPLLPEVEPEEEEKATPRPTKAKPTTIKRRPTERPTKKPTK 268


>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 18/66 (27%), Positives = 22/66 (33%)
 Frame = +1

Query: 547 DSKRAVAEPTETTPTNVSREEMEFTTESXVRDVDVGLETAQKTMKSRSCXSDHVRCHIRD 726
           D   A  E T+T       EE E T E  + D D   E A+                + D
Sbjct: 563 DKVEAEEEETQTESPTEKVEEAEATAEVPIEDADTSTEEAESPAAEPEVAVKEAEAPVED 622

Query: 727 DAXXLP 744
           DA   P
Sbjct: 623 DAFEEP 628


>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2671

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/70 (22%), Positives = 33/70 (47%)
 Frame = +1

Query: 493  RERRVEKSPSR*XQKQPEDSKRAVAEPTETTPTNVSREEMEFTTESXVRDVDVGLETAQK 672
            ++R+ +K   +  Q    D  + V  P   TP   SR+E+  + +    +++V +E ++K
Sbjct: 2406 KKRKKKKEGLKDDQTVARDVGKEVDTPEVDTPVYESRDELTSSRDFTSAEIEVDIEPSKK 2465

Query: 673  TMKSRSCXSD 702
              K +    D
Sbjct: 2466 RKKKKEGLKD 2475


>SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +1

Query: 493 RERRVEKSPSR*XQKQPEDSKRA-VAEPTE---TTPTNVSREEMEFTTESXVRDVDV 651
           R RR  K  SR  Q++P    RA V E T    TTP    REE E   +S VR  D+
Sbjct: 283 RSRR-SKDRSRSPQRKPSPVARATVGETTSAKPTTPPGSPREEEEAADQSDVRSDDL 338


>SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1)
          Length = 566

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +1

Query: 469 ESRRPAGLRERRVEKS-PSR*XQKQPEDSKRAVAEPTETTPTNVSRE-EMEFTTESXVRD 642
           ++R     R+ +  K+ PS+    +P+D  +  A P +  P   SR+ +   T  S  +D
Sbjct: 141 QARTSQASRKNKPSKNKPSKNKTTKPQDQDKQDARPRQARPREASRKTKTSKTKRSKPQD 200

Query: 643 VDVGLETAQKTMKSR 687
                + ++KT K +
Sbjct: 201 KQAERQASRKTSKPK 215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,740,298
Number of Sequences: 59808
Number of extensions: 488823
Number of successful extensions: 1245
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)