Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C16
         (884 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22060.1 68414.m02759 expressed protein                             29   3.1  
At4g34920.1 68417.m04951 1-phosphatidylinositol phosphodiesteras...    29   4.1  
At3g30640.1 68416.m03878 Ulp1 protease family protein contains P...    29   4.1  
At5g47420.1 68418.m05843 expressed protein contains Pfam domain,...    28   7.2  
At2g35550.2 68415.m04355 expressed protein                             28   7.2  
At2g35550.1 68415.m04354 expressed protein                             28   7.2  
At1g53800.1 68414.m06123 expressed protein                             28   7.2  
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f...    28   9.5  
At4g17420.1 68417.m02608 expressed protein contains Pfam domain,...    28   9.5  

>At1g22060.1 68414.m02759 expressed protein
          Length = 1999

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 205  MLDTHSLWSNLANEMQHLDDMMKELSLKF 291
            MLDT   +S++  E++ + D   +LSLKF
Sbjct: 1934 MLDTKGRYSSMETELREMHDRYSQLSLKF 1962


>At4g34920.1 68417.m04951 1-phosphatidylinositol
           phosphodiesterase-related contains weak similarity to
           1-phosphatidylinositol phosphodiesterase precursor (EC
           3.1.4.10) (Phosphatidylinositol-specific phospholipase
           C) (PI-PLC). (Swiss-Prot:P34024) [Listeria
           monocytogenes]
          Length = 318

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +1

Query: 184 SPYVRXSMLDTHSLWSNLANEMQHLDDMMKELSLK-FPAL*NEGRVEGDKYQISIHPAWL 360
           S Y++ + +DT   W+   + ++HL +     S K F  + N    + D   + + P   
Sbjct: 209 SDYLKDNWIDTDLPWTKFQSNLKHLSEQQPTSSRKFFYRVENTVTPQADNPVVWVKPVTD 268

Query: 361 RTERHQR 381
           R  +H R
Sbjct: 269 RIRKHAR 275


>At3g30640.1 68416.m03878 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 661

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +1

Query: 475 RRPAGLRERRVEKSP---SR*XQKQPEDSKRAVAEPTETTPTNVSREEMEFTTESXVRDV 645
           ++P  L E+  EK+    S   + +PE++K  V   T + P N  +E  E      V D 
Sbjct: 336 KKPKSLEEKAKEKADCGTSSGPKNKPEEAKEKVDGDTSSVPKNKPKEAKEKADGERVADD 395

Query: 646 DVGLETAQK 672
           D  L+   +
Sbjct: 396 DSILDVTDQ 404


>At5g47420.1 68418.m05843 expressed protein contains Pfam domain,
           PF01987: Protein of unknown function
          Length = 282

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 172 TTPFSPYVRXSMLDTHSLWSNLANEMQHLDDMMK 273
           +TPF PYV  S  DT + +  L  E Q +  M+K
Sbjct: 7   STPFQPYVYQSQQDTITPFQILGGESQVVQIMLK 40


>At2g35550.2 68415.m04355 expressed protein
          Length = 226

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/34 (29%), Positives = 24/34 (70%)
 Frame = +1

Query: 490 LRERRVEKSPSR*XQKQPEDSKRAVAEPTETTPT 591
           ++++ V +SPS+  + +P+  KR+V+  ++ TP+
Sbjct: 75  VKQKSVNQSPSKALKPKPQRKKRSVSNKSKKTPS 108


>At2g35550.1 68415.m04354 expressed protein
          Length = 271

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/34 (29%), Positives = 24/34 (70%)
 Frame = +1

Query: 490 LRERRVEKSPSR*XQKQPEDSKRAVAEPTETTPT 591
           ++++ V +SPS+  + +P+  KR+V+  ++ TP+
Sbjct: 120 VKQKSVNQSPSKALKPKPQRKKRSVSNKSKKTPS 153


>At1g53800.1 68414.m06123 expressed protein
          Length = 568

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 556 RAVAEPTETTPTNVSREEMEFTTESXVRDVDV 651
           R+ AEP + TPT  S  + EF  +S V+ V V
Sbjct: 295 RSDAEPRKKTPTKKSTRDSEFERQSQVQVVKV 326


>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 15 (UBP15)
           [Arabidopsis thaliana] GI:11993475; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 631

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 326 SPSTRPSFYNAGNFNDSSFIMSSKCCISLARLDQSECVSN 207
           SPS  PS   + + + S  +++S+CC  + R+D  +  SN
Sbjct: 532 SPSPSPSPSPSPSPSPSPSVLASECCSEVERIDTLDSESN 571


>At4g17420.1 68417.m02608 expressed protein contains Pfam domain,
           PF01987: Protein of unknown function
          Length = 285

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 172 TTPFSPYVRXSMLDTHSLWSNLANEMQHLDDMMK 273
           +TPF PYV  S  DT + +  L  E Q +  M+K
Sbjct: 7   STPFQPYVYQSQEDTITPFQILGGEAQVVQIMLK 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,957,865
Number of Sequences: 28952
Number of extensions: 328389
Number of successful extensions: 821
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)