Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C15
         (928 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_40684| Best HMM Match : NIF (HMM E-Value=0)                         30   3.1  
SB_45301| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)                  29   4.0  
SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0)                      29   7.1  
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)                        28   9.3  

>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2937

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = -2

Query: 459  ARWCGRRSLHAGACPSYTSP*TA*RHRHSCTCRNFSRCYTPWRSPLMSSNMVGLEDMVKQ 280
            + WC     +   C SY    T   H HS     +S C T + S ++  N +GL+   + 
Sbjct: 2151 SNWCYE---YKALCNSYGMQPTGTGHAHSSNTI-YSSCATYYGSIMLPGNQLGLDPKERV 2206

Query: 279  LHDAKLPSF 253
             H A+L  F
Sbjct: 2207 AHIARLAGF 2215


>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
          Length = 402

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +3

Query: 420 MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMR---ERINGGMFVYAFTA 590
           +L   ET VH +  ++E+A   F V Y    + VF+RT   ++   ER++    V  FTA
Sbjct: 220 VLDLDETLVHCSLNKLEDATLSFPVSYQDITYQVFVRTRPHLKYFLERVSKVFEVILFTA 279

Query: 591 A 593
           +
Sbjct: 280 S 280


>SB_45301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 734 GKYYGITXY*RXIWX*LTGVRXSAXSLSQNDVMSYFMEDVDLNXYMYYLHMNXPFWMT 907
           G+Y+  T Y   I+  +  VR S+    +    S F   + +  Y Y LH+N   W T
Sbjct: 23  GRYHRPTLYRPTIYVIVDDVRLSSTIYHRGRFTSRFTFTIFVTIYDYDLHLNHECWTT 80


>SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)
          Length = 1238

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -1

Query: 361  QLFSMLYSLAISLDVLKH-GRAGGYGQAA 278
            ++FS LYS   S+D+L+   RAGGY  AA
Sbjct: 932  EVFSRLYSEDFSIDLLRSWQRAGGYSSAA 960


>SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0)
          Length = 437

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 22/85 (25%), Positives = 35/85 (41%)
 Frame = -3

Query: 806 RRXPLRQSIXTKXVVSXP*CRSIFQRXRVLGGFSHLHHKGFTDDMAVNEEVGIDLVRSGQ 627
           R  P+  S+    +++     ++  R +VLGGF        T   A      +DL++ G+
Sbjct: 189 RFTPVPDSVINSALLAGGTENALSGRQQVLGGFQTPFPGAMTPGYAT-PSADLDLIKIGE 247

Query: 626 VETLAVGSVEARGSKSVDEHASVDP 552
                VG    + S SV     VDP
Sbjct: 248 ARKSLVGVKLDQASDSVTGQTVVDP 272


>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1011

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 531 TACWMRERINGGMFVYAFTAACFHR 605
           TAC+  + I+GG+ V+++  + FHR
Sbjct: 836 TACFWGQLISGGITVFSYRISSFHR 860


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,281,890
Number of Sequences: 59808
Number of extensions: 437380
Number of successful extensions: 1150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2693287426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)