Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C11
         (1016 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.052
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.091
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.091
SB_56| Best HMM Match : Actin (HMM E-Value=0)                          35   0.091
SB_56628| Best HMM Match : Actin (HMM E-Value=0)                       35   0.091
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)                     33   0.28 
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.49 
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)                      29   4.5  
SB_13267| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_59448| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.9  
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.9  

>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 35.9 bits (79), Expect = 0.052
 Identities = 43/109 (39%), Positives = 52/109 (47%)
 Frame = +3

Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
           P +   IQA  L+ YA    TTG    + G+G + H  P   G A P     +   G   
Sbjct: 130 PAMYVAIQA-VLSLYASGR-TTGIVMDS-GDG-VTHTVPIYEGYALPHAILRLDLAG--R 183

Query: 846 DLTDYLMKILTERGXLVHYHRRAGXSVRDIXXEAVXTFALEFRXRRMAT 992
           DLTDYLMKILTERG            VRDI  E +   AL+F  + MAT
Sbjct: 184 DLTDYLMKILTERGYSFTTTAER-EIVRDI-KEKLAYVALDFE-QEMAT 229


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 35.1 bits (77), Expect = 0.091
 Identities = 32/74 (43%), Positives = 38/74 (51%)
 Frame = +3

Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
           P +   IQA  L+ YA    TTG    + G+G + H  P   G A P     +   G   
Sbjct: 93  PAMYVAIQA-VLSLYASGR-TTGIVMDS-GDG-VTHTVPIYEGYALPHAIIRLDLAG--R 146

Query: 846 DLTDYLMKILTERG 887
           DLTDYLMKILTERG
Sbjct: 147 DLTDYLMKILTERG 160


>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 35.1 bits (77), Expect = 0.091
 Identities = 32/74 (43%), Positives = 38/74 (51%)
 Frame = +3

Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
           P +   IQA  L+ YA    TTG    + G+G + H  P   G A P     +   G   
Sbjct: 131 PAMYVAIQA-VLSLYASGR-TTGIVMDS-GDG-VTHTVPIYEGYALPHAIIRLDLAG--R 184

Query: 846 DLTDYLMKILTERG 887
           DLTDYLMKILTERG
Sbjct: 185 DLTDYLMKILTERG 198


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score = 35.1 bits (77), Expect = 0.091
 Identities = 32/74 (43%), Positives = 38/74 (51%)
 Frame = +3

Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
           P +   IQA  L+ YA    TTG    + G+G + H  P   G A P     +   G   
Sbjct: 130 PAMYVAIQA-VLSLYASGR-TTGIVMDS-GDG-VTHTVPIYEGYALPHAILRLDLAG--R 183

Query: 846 DLTDYLMKILTERG 887
           DLTDYLMKILTERG
Sbjct: 184 DLTDYLMKILTERG 197


>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score = 35.1 bits (77), Expect = 0.091
 Identities = 32/74 (43%), Positives = 38/74 (51%)
 Frame = +3

Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
           P +   IQA  L+ YA    TTG    + G+G + H  P   G A P     +   G   
Sbjct: 131 PAMYVAIQA-VLSLYASGR-TTGIVMDS-GDG-VTHTVPIYEGYALPHAILRLDLAG--R 184

Query: 846 DLTDYLMKILTERG 887
           DLTDYLMKILTERG
Sbjct: 185 DLTDYLMKILTERG 198


>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
          Length = 152

 Score = 33.5 bits (73), Expect = 0.28
 Identities = 30/74 (40%), Positives = 38/74 (51%)
 Frame = +3

Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
           P +   IQA  L+ YA    TTG    + G+G + H  P   G A P     +   G   
Sbjct: 9   PAVYVAIQA-VLSLYASGR-TTGVVFDS-GDG-VSHNVPIYEGYALPHAILRLDLAG--R 62

Query: 846 DLTDYLMKILTERG 887
           DLTDYLMK++TERG
Sbjct: 63  DLTDYLMKLMTERG 76


>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1069

 Score = 32.7 bits (71), Expect = 0.49
 Identities = 36/139 (25%), Positives = 52/139 (37%), Gaps = 5/139 (3%)
 Frame = -3

Query: 600 PLGXXGGSP--PVKAXTGVFPSGGRTTPGSIVRXGXECPNSFFPCQSPV*VTDFPCFEWG 427
           P G   GS   P        P   +TTP S++  G     +  P  SPV VT  P    G
Sbjct: 461 PPGSPAGSTQGPTDGVLSAKPPTKKTTPQSMIPPGKPTAPTPKPPGSPVGVTQGP--TEG 518

Query: 426 ILRVQEYXLXASGAXILPYIKEXLSVPIPDPXNAPEGRGPFPNESRGKHXPRGKH---QS 256
           ++  +      +   ++P      + P P P  +P G    P +      P  K    QS
Sbjct: 519 VVSAKPPTKKTTPQSMIP--PGTKTSPTPKPPGSPAGSTQGPTDGVVSAKPPTKKTTPQS 576

Query: 255 SXRKARPFAQYPEPIGLTT 199
                +P  Q P+P G T+
Sbjct: 577 MIPPGKPTDQTPKPPGSTS 595


>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
          Length = 468

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 892  SFTTTXEREXPFVTSXXKLCXRSLSNFEXGEWPPVASSQLP 1014
            +++T  E E P V +  ++C  +  NF     PP  S+Q P
Sbjct: 133  NYSTPREGEGPVVMARLRVCAPANINFTTAPEPPAKSAQTP 173


>SB_13267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 184 SWPRLGS*TNGFRVLCKGPGFPXXXLMLPSRXVFSPRFVGERXPPFRGVXWVGYGDRK 357
           +W + GS ++ F V  K   FP   L +  R  + P  +    PP R    +  GDRK
Sbjct: 62  AWSKQGSRSHAFNVALKELFFPTMQLNVQLRMSYVPTLLNPADPPSRR---LSVGDRK 116


>SB_59448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 941  RSCAYVRSRISXQENGHRLHPASSP 1015
            R C + R  IS  E  HR HP S P
Sbjct: 47   RGCQHPREHISDTEPTHRAHPQSPP 71


>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
 Frame = -3

Query: 342 PDPXNAPEGRGPF----PNESRGKHXPRGKHQSSXRKARPFAQYPEPIGLTTQPRPT 184
           PDP N  + R       P  S+ +  PR   Q    +     +YP P     QPRP+
Sbjct: 186 PDPVNNRDTRDTINNRHPRPSQQQRHPRPSQQQRHPRPSQQQRYPRPSQQQRQPRPS 242


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,365,489
Number of Sequences: 59808
Number of extensions: 534149
Number of successful extensions: 1065
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3023635215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)