Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_C11
(1016 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 36 0.057
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 35 0.100
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 35 0.100
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 35 0.100
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 33 0.23
At5g50260.1 68418.m06224 cysteine proteinase, putative similar t... 33 0.23
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 33 0.23
At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa s... 33 0.23
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 32 0.53
At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa s... 32 0.53
At5g42620.1 68418.m05188 expressed protein 32 0.70
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 32 0.70
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 32 0.70
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 29 4.9
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 35.5 bits (78), Expect = 0.057
Identities = 32/74 (43%), Positives = 38/74 (51%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 132 PAMYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VSHTVPIYEGYALPHAILRLDLAG--R 185
Query: 846 DLTDYLMKILTERG 887
DLTDYLMKILTERG
Sbjct: 186 DLTDYLMKILTERG 199
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 34.7 bits (76), Expect = 0.100
Identities = 31/76 (40%), Positives = 39/76 (51%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G + P + G
Sbjct: 132 PAMYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VSHTVPIYEGFSLPHAILRLDLAG--R 185
Query: 846 DLTDYLMKILTERGXL 893
DLTDYLMKILTERG +
Sbjct: 186 DLTDYLMKILTERGYM 201
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 34.7 bits (76), Expect = 0.100
Identities = 31/76 (40%), Positives = 39/76 (51%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G + P + G
Sbjct: 132 PAMYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VSHTVPIYEGFSLPHAILRLDLAG--R 185
Query: 846 DLTDYLMKILTERGXL 893
DLTDYLMKILTERG +
Sbjct: 186 DLTDYLMKILTERGYM 201
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 34.7 bits (76), Expect = 0.100
Identities = 31/76 (40%), Positives = 39/76 (51%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G + P + G
Sbjct: 132 PAMYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VSHTVPIYEGFSLPHAILRLDLAG--R 185
Query: 846 DLTDYLMKILTERGXL 893
DLTDYLMKILTERG +
Sbjct: 186 DLTDYLMKILTERGYM 201
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 33.5 bits (73), Expect = 0.23
Identities = 31/74 (41%), Positives = 38/74 (51%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 132 PAMYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VSHTVPIYEGYALPHAILRLDLAG--R 185
Query: 846 DLTDYLMKILTERG 887
DLTD+LMKILTERG
Sbjct: 186 DLTDHLMKILTERG 199
>At5g50260.1 68418.m06224 cysteine proteinase, putative similar to
cysteine endopeptidase precursor CysEP GI:2944446 from
[Ricinus communis]
Length = 361
Score = 33.5 bits (73), Expect = 0.23
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 336 GRVWGQKGXL*CKEE*XHQKXKXGIPEPSKYPIRNTGNRSLKLGID 473
G WG+KG + + H++ GI + YP++N+ +L +D
Sbjct: 310 GEEWGEKGYIRMQRGIRHKEGLCGIAMEASYPLKNSNTNPSRLSLD 355
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 33.5 bits (73), Expect = 0.23
Identities = 31/74 (41%), Positives = 38/74 (51%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 132 PAMYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VSHTVPIYEGYALPHAILRLDLAG--R 185
Query: 846 DLTDYLMKILTERG 887
DLTD+LMKILTERG
Sbjct: 186 DLTDHLMKILTERG 199
>At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa
subunit, mitochondrial (TYKY) identical to SP|Q42599
NADH-ubiquinone oxidoreductase 23 kDa subunit,
mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
(Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
(CI-28.5KD) {Arabidopsis thaliana}
Length = 222
Score = 33.5 bits (73), Expect = 0.23
Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -1
Query: 449 ISRVSNGVF*GFRNTXFXL-LVPSFFLTLKXPFLSPYPTXSTPLKGGXLSPTNRGENTCR 273
IS+ N VF NT F +V LTLK F P T + P + G LSP RGE+ R
Sbjct: 56 ISKDWNTVFERSINTLFLTEMVRGLSLTLKY-FFDPKVTINYPFEKGPLSPRFRGEHALR 114
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 32.3 bits (70), Expect = 0.53
Identities = 31/76 (40%), Positives = 38/76 (50%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 132 PAMYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VSHTVPIYEGYALPHAILRLDLAG--R 185
Query: 846 DLTDYLMKILTERGXL 893
DLTD LMKILTERG +
Sbjct: 186 DLTDSLMKILTERGYM 201
>At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa
subunit, mitochondrial, putative very strong similarity
to SP|Q42599 NADH-ubiquinone oxidoreductase 23 kDa
subunit, mitochondrial precursor (EC 1.6.5.3) (EC
1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
(CI-28.5KD) {Arabidopsis thaliana}; contains Pfam
profile PF00037: iron-sulfur cluster-binding protein
Length = 222
Score = 32.3 bits (70), Expect = 0.53
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -1
Query: 449 ISRVSNGVF*GFRNTXFXL-LVPSFFLTLKXPFLSPYPTXSTPLKGGXLSPTNRGENTCR 273
IS+ + VF NT F +V LTLK F P T + P + G LSP RGE+ R
Sbjct: 56 ISKDWSTVFERSMNTLFLTEMVRGLSLTLKY-FFDPKVTINYPFEKGPLSPRFRGEHALR 114
>At5g42620.1 68418.m05188 expressed protein
Length = 841
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 633 SCFEKHFKHAPPMLRSPIQAGALACYAFXFVTTGYRAG--TPGNGXLQHR 776
SC + + AP + ++ C A V TG+ G T GNG QHR
Sbjct: 501 SCTDINSARAPDRMLGEVRGSESRCMASSLVRTGFVRGSMTQGNGCYQHR 550
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 31.9 bits (69), Expect = 0.70
Identities = 31/74 (41%), Positives = 37/74 (50%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 132 PAMYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VSHTVPIYEGYALPHAILRLDLAG--R 185
Query: 846 DLTDYLMKILTERG 887
DLTD LMKILTERG
Sbjct: 186 DLTDALMKILTERG 199
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 31.9 bits (69), Expect = 0.70
Identities = 31/74 (41%), Positives = 37/74 (50%)
Frame = +3
Query: 666 PMLRSPIQAGALACYAFXFVTTGYRAGTPGNGXLQHRXPSTXGXAXPPXXSWVXEFGPVX 845
P + IQA L+ YA TTG + G+G + H P G A P + G
Sbjct: 132 PAMYVAIQA-VLSLYASGR-TTGIVLDS-GDG-VSHTVPIYEGYALPHAILRLDLAG--R 185
Query: 846 DLTDYLMKILTERG 887
DLTD LMKILTERG
Sbjct: 186 DLTDALMKILTERG 199
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 765 LQHRXPSTXGXAXPPXXSWVXEFGPVXDLTDYLMKILTERG 887
+ H P G A P + G DLTDYL++I+TERG
Sbjct: 150 VSHTVPVYEGYALPHGILRLDLGG--RDLTDYLIEIMTERG 188
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,954,859
Number of Sequences: 28952
Number of extensions: 390485
Number of successful extensions: 748
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2499440136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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