Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C07
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)                  31   0.91 
SB_26478| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=7.6e-10)          31   1.2  
SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
 Frame = +2

Query: 203 PNPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNG-YEPIDNGAY----YVDPPQGRPY 367
           PNP +  P     Y P  N PY   P   Y P+ N  Y P  N  Y    Y  PP   P 
Sbjct: 112 PNPPYPPPP-NAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPP 170

Query: 368 FKPTPFP 388
             P P P
Sbjct: 171 NAPYPPP 177



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
 Frame = +2

Query: 203 PNPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNG-YEPIDNGAY--YVDPPQGRPYFK 373
           P P+   P     Y P  N PY   P   Y P  N  Y P  N  Y    +PP   P + 
Sbjct: 105 PPPY--PPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYP 162

Query: 374 PTPFP 388
           P P P
Sbjct: 163 PPPNP 167


>SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)
          Length = 447

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
 Frame = +2

Query: 179 LTQLXSMXPNPFFA-QPTVGN----GYEPIDNRPYIVNPPKDYN-PNGNGYEPID----N 328
           +T L      P F+ QP   N    G  P +  P+   PP  YN P  NG  P +    N
Sbjct: 268 ITYLDKSDTGPSFSGQPPYNNPLFTGQPPYNAPPFTGQPP--YNAPPFNGQPPYNTPPFN 325

Query: 329 G--AYYVDPPQGRPYFKPTPFPG 391
           G   YY  P  G+P +   PF G
Sbjct: 326 GQPPYYTPPFNGQPLYHTPPFNG 348



 Score = 31.5 bits (68), Expect = 0.91
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = +2

Query: 209 PFFAQPTVG----NGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 376
           PF  QP       NG  P +  P+   PP  Y P  NG +P+    Y+  P  G+P +  
Sbjct: 301 PFTGQPPYNAPPFNGQPPYNTPPFNGQPPY-YTPPFNG-QPL----YHTPPFNGQPPYNT 354

Query: 377 TPFPG 391
            PF G
Sbjct: 355 PPFNG 359


>SB_26478| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=7.6e-10)
          Length = 142

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = -3

Query: 346 VHVICTVVDRFVAVSIRVVIFGRINDVRAVVNRFVAVSYSRLGKEWIRGH 197
           V ++  V+    AVS+ V + G + D RA++N FV V Y+  G+ ++R H
Sbjct: 24  VSLMVAVIGGVYAVSLMVAVIGCLYDGRAIMN-FV-VKYTPSGQYYLRPH 71


>SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 874

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -3

Query: 367 VRSALGRVHVICTVVDRFVAVSIRVVIFGRINDVRAVVNRFVAVSYSRL 221
           VR  + R      VV R    S+RVV+   +  VR V+ R+VA++  R+
Sbjct: 772 VRVVMRRYVTSVRVVMRRYVASVRVVMPRYVASVRVVMRRYVAIASVRV 820


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,238,052
Number of Sequences: 59808
Number of extensions: 332792
Number of successful extensions: 1056
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)