Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_C07
         (858 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    30   1.7  
At4g08410.1 68417.m01390 proline-rich extensin-like family prote...    30   2.3  
At4g08400.1 68417.m01388 proline-rich extensin-like family prote...    30   2.3  
At1g76010.1 68414.m08825 expressed protein                             30   2.3  
At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putati...    29   5.2  
At1g23720.1 68414.m02994 proline-rich extensin-like family prote...    29   5.2  
At5g44780.1 68418.m05488 expressed protein low similarity to SP|...    28   6.9  
At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL...    28   6.9  
At1g72110.1 68414.m08335 expressed protein                             28   6.9  
At1g07310.1 68414.m00778 C2 domain-containing protein contains s...    28   9.1  

>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +2

Query: 203 PNPFFAQPTVG--NGYEPIDNRP-YIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFK 373
           P P+   P  G   G  P+ + P + + PP ++     G  P+  G  Y  PPQ  P   
Sbjct: 249 PPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGGFPYGAPPQQLPSAP 308

Query: 374 PTP 382
            TP
Sbjct: 309 GTP 311


>At4g08410.1 68417.m01390 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 707

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +2

Query: 194 SMXPNPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNG-YEPIDNGAYYVDPPQGRPYF 370
           S  P P+++     N   P     Y   PP  Y+P+  G Y+       Y  PP   PY+
Sbjct: 133 SSPPPPYYSPSPKVNYKSPPPPYVYSSPPPPYYSPSPKGDYKSPPPPYVYSSPPP--PYY 190

Query: 371 KPTP 382
            P+P
Sbjct: 191 SPSP 194


>At4g08400.1 68417.m01388 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 513

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +2

Query: 194 SMXPNPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNG-YEPIDNGAYYVDPPQGRPYF 370
           S  P P+++     N   P     Y   PP  Y+P+  G Y+       Y  PP   PY+
Sbjct: 115 SSPPPPYYSPSPKVNYKSPPPPYVYSSPPPPYYSPSPKGDYKSPPPPYVYSSPPP--PYY 172

Query: 371 KPTP 382
            P+P
Sbjct: 173 SPSP 176


>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 28/71 (39%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +2

Query: 203 PNPFFAQPTVGNGYE-PIDNRPYIVNPPKDYNPNGNG-YE-PIDNGAYYVDPPQG-RPYF 370
           PN + A    G GY+ P ++R Y      D  P G G Y+ P   G Y  D PQG R Y 
Sbjct: 212 PNEYDAPQDGGYGYDAPHEHRGYDDRGGYDAPPQGRGGYDGPQGRGGY--DGPQGRRGYD 269

Query: 371 KPTPFPGARGG 403
            P   P  RGG
Sbjct: 270 GP---PQGRGG 277


>At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650208]
           [PMID:11247608]; oxidosqualene cyclase; also highly
           similar to beta-amyrin synthase, lupeol synthase,
           cycloartenol synthase
          Length = 729

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 221 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAY-YVDPPQGRP 364
           +PT+  GY  +    +  NPP DY    N +  I  G + Y D  QG P
Sbjct: 438 RPTLIKGYSYLRKSQFTENPPGDYI---NMFRDISKGGWGYSDKDQGWP 483


>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 895

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +2

Query: 263 PYIVN--PPKDYNPNGNG-YEPIDNGAYYVDPPQGRPYFKPTPFP 388
           PY+ N  PP  Y+P+    Y+       Y  PP   PY+ PTP P
Sbjct: 612 PYVYNSPPPPYYSPSPKPTYKSPPPPYVYSSPPP--PYYSPTPKP 654


>At5g44780.1 68418.m05488 expressed protein low similarity to
           SP|Q38732 DAG protein, chloroplast precursor
           {Antirrhinum majus}
          Length = 723

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 287 DYNP-NGNGYEPIDNGAYYVDPPQGR 361
           +Y+P NG  Y P   G +Y  PPQG+
Sbjct: 530 NYSPQNGGHYGPAQFGQWYPGPPQGQ 555


>At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1
           (PLDBETA1) identical to SP|P93733 Phospholipase D beta 1
           (EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta)
           {Arabidopsis thaliana}; contains Pfam profiles: PF00614
           phospholipase D.active site motif, PF00168 C2 domain
          Length = 1083

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 287 DYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 388
           DY P+   Y+P  N   Y  PP    Y +P  +P
Sbjct: 101 DYQPSPYPYQPQGNFGAYGPPPPHYSYQEPAQYP 134


>At1g72110.1 68414.m08335 expressed protein
          Length = 479

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 476 NSYEILKYIVNTLFRY*-FSKIFFTSHREHQGK 381
           N+  I++ I NTL  +  FS I  T H EH+GK
Sbjct: 41  NASTIVEGIKNTLINHPRFSSILVTGHGEHKGK 73


>At1g07310.1 68414.m00778 C2 domain-containing protein contains
           similarity to shock protein SRC2 [Glycine max]
           gi|2055230|dbj|BAA19769 ; contains Pfam profile
           PF00168:C2 domain
          Length = 352

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 278 PPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 388
           PP  + P     +P+D    Y   PQG  Y+ P+P P
Sbjct: 141 PPPQHPPPRPQSQPLD----YYSAPQGNHYYSPSPPP 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,850,131
Number of Sequences: 28952
Number of extensions: 247799
Number of successful extensions: 631
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)