Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP05_F_C05
(999 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 33 0.48
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 33 0.48
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.63
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.84
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 32 0.84
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) 31 1.1
SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08) 31 1.5
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 31 1.9
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4) 30 3.4
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 30 3.4
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 32.7 bits (71), Expect = 0.48
Identities = 22/62 (35%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Frame = +3
Query: 231 PPP*XXGPXF-IFXPXKXXLVLXKPXPPPXXXXPPFFWPPXXGGXKGGXKXXFKKKXPPX 407
PPP GP P P PPP PP PP G GG K PP
Sbjct: 217 PPPPGRGPSQRSLAPPPTGSSRPLPAPPPGENRPP---PPMRGPTSGGEPPPPKNAPPPP 273
Query: 408 KR 413
KR
Sbjct: 274 KR 275
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 32.7 bits (71), Expect = 0.48
Identities = 22/62 (35%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Frame = +3
Query: 231 PPP*XXGPXF-IFXPXKXXLVLXKPXPPPXXXXPPFFWPPXXGGXKGGXKXXFKKKXPPX 407
PPP GP P P PPP PP PP G GG K PP
Sbjct: 129 PPPPGRGPSQRSLAPPPTGSSRPLPAPPPGENRPP---PPMRGPTSGGEPPPPKNAPPPP 185
Query: 408 KR 413
KR
Sbjct: 186 KR 187
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 32.3 bits (70), Expect = 0.63
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPP 957
P P PPLP P P Q PAP PPP
Sbjct: 85 PPPPPPLPAPPPPPAQ-----PAPQPPP 107
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 31.9 bits (69), Expect = 0.84
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPPXXT 966
P P PP P P P P P PPP T
Sbjct: 1157 PPPPPPPPPPPPSSPSPPPPPPPPPPPPTPT 1187
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 31.9 bits (69), Expect = 0.84
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPP 957
P P PP P P P PAP PPP
Sbjct: 397 PPPPPPPPPPPPPPPPPPPPPPAPPPPP 424
Score = 30.7 bits (66), Expect = 1.9
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPP 957
P+P PP P P P P P PPP
Sbjct: 376 PSPPPPPPPPPPSPPPPPQPPPPPPPPP 403
Score = 30.7 bits (66), Expect = 1.9
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPP 957
P P PP P P P + P P PPP
Sbjct: 380 PPPPPPPPSPPPPPQPPPPPPPPPPPPP 407
Score = 30.7 bits (66), Expect = 1.9
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPP 957
P P PP P P P P P PPP
Sbjct: 399 PPPPPPPPPPPPPPPPPPPPAPPPPPPP 426
Score = 30.3 bits (65), Expect = 2.6
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPP 957
P P PP P P P P P PPP
Sbjct: 374 PPPSPPPPPPPPPPSPPPPPQPPPPPPP 401
Score = 30.3 bits (65), Expect = 2.6
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPP 957
P P PP P P P P P PPP
Sbjct: 382 PPPPPPSPPPPPQPPPPPPPPPPPPPPP 409
Score = 30.3 bits (65), Expect = 2.6
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPP 957
P P PP P P P P P PPP
Sbjct: 402 PPPPPPPPPPPPPPPPPAPPPPPPPPPP 429
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPP 957
P P PP P P P P P PPP
Sbjct: 378 PPPPPPPPPPSPPPPPQPPPPPPPPPPP 405
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPP 957
P P PP P P P P P PPP
Sbjct: 391 PPPQPPPPPPPPPPPPPPPPPPPPPPPP 418
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPP 957
P P PP P P P P P PPP
Sbjct: 395 PPPPPPPPPPPPPPPPPPPPPPPPAPPP 422
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPP 957
P P PP P P P P P PPP
Sbjct: 400 PPPPPPPPPPPPPPPPPPPAPPPPPPPP 427
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPP 957
P P PP P P P P P PPP
Sbjct: 401 PPPPPPPPPPPPPPPPPPAPPPPPPPPP 428
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPP 957
P P PP P P P P P PPP
Sbjct: 403 PPPPPPPPPPPPPPPPAPPPPPPPPPPP 430
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPP 957
P P PP P P P P P PPP
Sbjct: 404 PPPPPPPPPPPPPPPAPPPPPPPPPPPP 431
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPP 957
P P PP P P P P P PPP
Sbjct: 405 PPPPPPPPPPPPPPAPPPPPPPPPPPPP 432
Score = 29.1 bits (62), Expect = 5.9
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPP 957
P P PP P P Q P P PPP
Sbjct: 379 PPPPPPPPPSPPPPPQPPPPPPPPPPPP 406
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 31.5 bits (68), Expect = 1.1
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +3
Query: 879 PPPPPSXPXPXKKTXXXGGXRXXPPPPXXHXXFPRXGGG 995
PPPPP P + G PPPP P GGG
Sbjct: 933 PPPPPGGSAPSQPPPPGGNAPPPPPPPGGSA--PPPGGG 969
>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
Length = 739
Score = 31.5 bits (68), Expect = 1.1
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +3
Query: 879 PPPPPSXPXPXKKTXXXGGXRXXPPPPXXHXXFPRXGGG 995
PPPPP P P GG PPPP P GG
Sbjct: 195 PPPPPPPPPPG----FPGGAPPPPPPPFGAPPPPALNGG 229
>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
Length = 593
Score = 31.1 bits (67), Expect = 1.5
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPPXXTXH 972
P P PP P P P P P PPP H
Sbjct: 466 PPPPPPPPPPPPPPPPPPPPPPFPPPPPPTPLH 498
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPP 957
P P PP P P P P P PPP
Sbjct: 464 PPPPPPPPPPPPPPPPPPPPPPPPFPPP 491
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 30.7 bits (66), Expect = 1.9
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 297 KPXPPPXXXXPPFFWPPXXGGXKGGXKXXFKKKXPP 404
KP PPP PP PP G G K PP
Sbjct: 465 KPPPPPAPALPPLPLPPELPGSPGDSPPATSPKQPP 500
>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
Length = 330
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +3
Query: 873 AXPPPPPSXPXPXKKTXXXGGXRXXPPPP 959
A PPPPP P G + PPPP
Sbjct: 278 ATPPPPPPPPSNTPGMFASSGFQPPPPPP 306
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPP 957
P P PP P P P R P P PP
Sbjct: 211 PPPSPPPPPPPPSPSPPRPPPPPPPSPP 238
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 29.5 bits (63), Expect = 4.5
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +1
Query: 874 PAPXPPLPXPXPXKKQXRXXGPAPXPPPXXTXHXFPGXGGG 996
P P PP P P P Q P P P PG G
Sbjct: 687 PPPPPPPPPPPPPPPQPSTPPPPPPSTPPVQQSGAPGSPAG 727
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,597,206
Number of Sequences: 59808
Number of extensions: 252894
Number of successful extensions: 1662
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2979300250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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