Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B23
         (838 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   3e-13

>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 39/90 (43%), Positives = 51/90 (56%)
 Frame = +1

Query: 187 KENQFIVDDVSKIIKEAIENSIGGTAYQHKQCQPNGTSXSC*VMSGAVD*VTKTIQYVVT 366
           +E  F+VD+VS IIKE IE +IGG AYQH +     TS         +  + K  +Y+VT
Sbjct: 8   EETSFVVDEVSNIIKEGIEGAIGGNAYQHNKVN-QWTSNVVEQCLNQLTKLGKPFKYIVT 66

Query: 367 XHNTAEEWCRTAYSSSCYXDNTTDGSCTVR 456
                +       SSSCY DNTTDGSCT++
Sbjct: 67  CVIMQKNGAGLHTSSSCYWDNTTDGSCTIK 96



 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 26/43 (60%), Positives = 28/43 (65%)
 Frame = +2

Query: 275 NNVNQMGLXXVVESCLGQLTKLQKPYNM**PCTILQKNGAGLH 403
           N VNQ     VVE CL QLTKL KP+     C I+QKNGAGLH
Sbjct: 37  NKVNQW-TSNVVEQCLNQLTKLGKPFKYIVTCVIMQKNGAGLH 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,560,457
Number of Sequences: 59808
Number of extensions: 353162
Number of successful extensions: 581
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)