Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP05_F_B10
         (917 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55731| Best HMM Match : DUF988 (HMM E-Value=7.2)                    30   2.3  
SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.0  
SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)                    29   7.0  
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_55731| Best HMM Match : DUF988 (HMM E-Value=7.2)
          Length = 140

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 458 RREWFGVGCSVFRXFDGNIPXAFFCF 535
           +  WFGV CSV +   G +P A F F
Sbjct: 80  KESWFGVHCSVIKAQFGGVPIANFFF 105


>SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = +2

Query: 152 EAFFDEYELL*FRPRQAHFHGPRVGKQRTKKEASENTNHFDPSG 283
           E +FDEY+   F  R       R G  R+K+EA  NTN F P G
Sbjct: 2   EPYFDEYDYYNF-DRNVVEGNTRKG--RSKREACLNTNRFCPGG 42


>SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 911

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 478 HPEPFPSGYPAIGVPP 431
           HP P P+GYP  G PP
Sbjct: 641 HPPPPPAGYPGYGPPP 656


>SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)
          Length = 1123

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 183 NFDHDKHIFTGHGWVSSAPRKKRLKTP 263
           N +HD+H+  G G    AP K R+  P
Sbjct: 918 NVNHDQHVIPGMGDYEVAPLKNRIPNP 944


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 225  VSSAPRKKRLKTPTTSIRPGHSRKIGHETHETLSXXXKDFKHPXXN 362
            ++S  R KRLKT     R GH ++   ET   L+   K FK    N
Sbjct: 2208 MTSGRRTKRLKTSQKDTRQGHDKR-PLETRGNLANNWKTFKRLWIN 2252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,064,689
Number of Sequences: 59808
Number of extensions: 387791
Number of successful extensions: 866
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2657535823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)