Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O15
         (884 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    61   4e-08
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    58   2e-07
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    48   4e-04
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    41   0.048
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.11 
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0...    39   0.15 

>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 60.9 bits (141), Expect = 4e-08
 Identities = 33/38 (86%), Positives = 33/38 (86%), Gaps = 1/38 (2%)
 Frame = +3

Query: 384 SLTRCARSF-RLRRAVSAHSKAVIRLSTESGDNAGKNM 494
           SLT   RS  RLRRAVSAHSKAVIRLSTESGDNAGKNM
Sbjct: 22  SLTDSLRSVVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 58.4 bits (135), Expect = 2e-07
 Identities = 32/54 (59%), Positives = 33/54 (61%)
 Frame = -3

Query: 582 MLVRGXEXMEKRPATRPFYXSXPLXXLXXTCSFLRYPLIXWITVLPPLSELIPL 421
           MLVRG E MEKR          P+     TCSF  YPLI WITVLPPLSEL PL
Sbjct: 1   MLVRGAEPMEKRLRC----WLLPVLCFLLTCSFRLYPLILWITVLPPLSELTPL 50


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 47.6 bits (108), Expect = 4e-04
 Identities = 26/42 (61%), Positives = 27/42 (64%)
 Frame = +3

Query: 315 CINESANARGEAVCVLGALPLPXSLTRCARSFRLRRAVSAHS 440
           CI + A AR EAV VL ALPL  S TRC RS     AVSAHS
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHS 307


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 40.7 bits (91), Expect = 0.048
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +1

Query: 313 SALMNRPTRGERRFAYW 363
           +ALMNRPTRGERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.5 bits (88), Expect = 0.11
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = -2

Query: 367 APNTQTASPRALADSLMQ 314
           APNTQTASPRALADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_UPI00015C640B Cluster: hypothetical protein
           CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
           Citrobacter koseri ATCC BAA-895
          Length = 99

 Score = 39.1 bits (87), Expect = 0.15
 Identities = 25/51 (49%), Positives = 28/51 (54%)
 Frame = -2

Query: 754 ERRHAXPKGKXAEQVSGKXAXVGXRRGXEGSXXGXNAXYLNSPVGXRPXLT 602
           E+    PKGK AEQVSGK      RR  EG+  G  +    SPVG RP LT
Sbjct: 51  EKAPRFPKGKKAEQVSGKRQG-RNRRAHEGA-AGEKSPASLSPVGFRPPLT 99


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,184,924
Number of Sequences: 1657284
Number of extensions: 8518269
Number of successful extensions: 14146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14141
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79522270534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)