Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_N11
         (876 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ...    29   3.1  
At5g45590.1 68418.m05601 expressed protein                             29   4.1  
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    29   4.1  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   5.4  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   5.4  
At5g43390.1 68418.m05304 hypothetical protein strong similarity ...    29   5.4  
At1g61590.1 68414.m06940 protein kinase, putative contains prote...    29   5.4  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   7.1  
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ...    28   7.1  
At1g11210.1 68414.m01284 expressed protein contains similarity t...    28   9.4  

>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 244

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = -1

Query: 588 FATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPLS 409
           F  S  S+D+         YG   A  P YGS P  G+    +   YP + +     P++
Sbjct: 138 FGFSSYSMDYNYPTSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGNGPVT 197

Query: 408 ELIPL 394
              PL
Sbjct: 198 GYAPL 202


>At5g45590.1 68418.m05601 expressed protein
          Length = 173

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 569 LKSEVAKPDRTIKIPGVSPWKLLVRSPVPTLPLTGYLSAFSLREAWRFL 715
           L+S   + +R +   G SP +L+  SP P+  LT     F+    W F+
Sbjct: 8   LRSISLQSNRNLSFYGASPHRLIHHSPSPSRHLTTTTLGFANSTKWSFV 56


>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
           (RbohA) / NADPH oxidase identical to respiratory burst
           oxidase protein A from Arabidopsis thaliana [gi:3242781]
          Length = 902

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 537 RPPDEHHKNRRSSQRW 584
           RPPDEH  NR  S+ W
Sbjct: 667 RPPDEHRLNRADSKHW 682


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 346  PLPRSLTRCARSFGCGERYQLTQRR 420
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 346  PLPRSLTRCARSFGCGERYQLTQRR 420
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


>At5g43390.1 68418.m05304 hypothetical protein strong similarity to
           unknown protein (emb|CAB86628.1)
          Length = 643

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = +2

Query: 560 KSTLKSEVAKP-DRTIKIPGVS----PWKLLVRSPVPTLPLTGYLSAFSLREAWRF 712
           +  L+ EV  P  + +++P VS     W LL  + VP++ +  Y S F+  ++ RF
Sbjct: 308 RDRLRKEVLVPLHKALELPEVSMSAKEWNLLKYNRVPSIAMQNYSSRFAEHDSERF 363


>At1g61590.1 68414.m06940 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069; similar to serine/threonine
           protein kinase gi|1066501|gb|AAA81538
          Length = 424

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 706 PRFPKGEGGQVSGKRQGRNRRAHEELPG 623
           P  PK +GG+VS K +G +R   +  PG
Sbjct: 393 PLSPKSQGGKVSPKVRGDHRSGRKSAPG 420


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 337 PIRKPPLPARWPIH*CRKNLPHL 269
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 245

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -1

Query: 588 FATSDLSVDFCDARQGG-GAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPL 412
           F  S  S+D+    Q     YG   A  P YGS P  G+    +   YP + +     P+
Sbjct: 138 FGFSSYSMDYNYPTQSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGNGPV 197

Query: 411 SELIPL 394
           +   PL
Sbjct: 198 TGYAPL 203


>At1g11210.1 68414.m01284 expressed protein contains similarity to
           cotton fiber expressed protein 1 [Gossypium hirsutum]
           gi|3264828|gb|AAC33276
          Length = 308

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 551 ASQKSTLKSEVAKPDRTIKIPGVSPWKLLVRSPVPTLPLTGY 676
           A + S     VAKP R   +     WK+++     TLPLT Y
Sbjct: 180 AERNSMRALRVAKPKRNETLENT--WKMIMEGNKSTLPLTSY 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,872,812
Number of Sequences: 28952
Number of extensions: 322988
Number of successful extensions: 850
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)