Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O05
         (869 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    22   7.2  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.5  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   9.5  

>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 24  IAEFLKI*MCDNFKDSHPFLK 86
           +  F K+ + +N  D H FLK
Sbjct: 71  VVSFHKLKLTNNISDKHGFLK 91


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 288 HHIRLDCHHIRLDYHHIRPDCHH 220
           +H +L  HH    +H IRP   H
Sbjct: 85  YHPQLHSHHGPPIHHQIRPPILH 107


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 288 HHIRLDCHHIRLDYHHIRPDCHH 220
           +H +L  HH    +H IRP   H
Sbjct: 85  YHPQLHSHHGPPIHHQIRPPILH 107


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 288 HHIRLDCHHIRLDYHHIRPDCHH 220
           +H +L  HH    +H IRP   H
Sbjct: 85  YHPQLHSHHGPPIHHQIRPPILH 107


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 288 HHIRLDCHHIRLDYHHIRPDCHH 220
           +H +L  HH    +H IRP   H
Sbjct: 85  YHPQLHSHHGPPIHHQIRPPILH 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,993
Number of Sequences: 336
Number of extensions: 1488
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23996456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)