Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O02
         (856 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ...    29   5.2  
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ...    29   5.2  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   5.2  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   5.2  
At3g20850.1 68416.m02636 proline-rich family protein contains pr...    29   5.2  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   6.9  
At1g63720.1 68414.m07211 expressed protein similar to putative p...    28   9.1  

>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 383

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = +1

Query: 553 HHKNRRSSQRWRXPDXTIKIPGXSPLEAPLXRSPGSDPCPPYPEYLVRPFXPSGKP 720
           HH N    Q+WR P  T       P   P+   P    CPPYP      + P+  P
Sbjct: 10  HHHNHNHQQQWR-PAPT------QPNICPICTVPHFPFCPPYPPPSSFAYNPNFPP 58


>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
           nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
           cDNA provides a truncated ORF likely due to a skipped
           exon. An alternative ORF is provided.
          Length = 661

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = +1

Query: 553 HHKNRRSSQRWRXPDXTIKIPGXSPLEAPLXRSPGSDPCPPYPEYLVRPFXPSGKP 720
           HH N    Q+WR P  T       P   P+   P    CPPYP      + P+  P
Sbjct: 10  HHHNHNHQQQWR-PAPT------QPNICPICTVPHFPFCPPYPPPSSFAYNPNFPP 58


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 346  PLPRSLTRCARSFGCGERYQLTQRR 420
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 346  PLPRSLTRCARSFGCGERYQLTQRR 420
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


>At3g20850.1 68416.m02636 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 134

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 613 PGXSPLEAPLXRSPGSDPCPPYPEYLVRP 699
           P  SPL +P+  SP   P PP P Y   P
Sbjct: 38  PQHSPLPSPVYSSPADLPPPPTPVYSPPP 66


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 337 PIRKPPLPARWPIH*CRKNLPHL 269
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


>At1g63720.1 68414.m07211 expressed protein similar to putative
           protein GB:CAA18164 [Arabidopsis thaliana]
          Length = 358

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 607 KIPGXSPLEAPLXRSPGSDPCPPYPE 684
           ++P  SPL   +  SPGS P  P+P+
Sbjct: 213 QLPPGSPLGQLISPSPGSGPTSPFPD 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,627,058
Number of Sequences: 28952
Number of extensions: 294991
Number of successful extensions: 761
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)