Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N23
         (850 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   3.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   3.1  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   5.3  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 326 VRSVTNPENNEASIEHSHHTVDIGLD-QPIESHRNTRDLRFLYPRGKLPVPTLPPFNPKP 502
           ++   N   N+ +++H     +  L  Q + S+ N   +  + P G +   T+P + P P
Sbjct: 97  LKKCQNVGMNKDAVQHERGPRNSTLRRQQMSSYYNESRV-MMSPPGNVLNLTMPKYEPNP 155

Query: 503 IYIDMG 520
             ID G
Sbjct: 156 SIIDPG 161


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 326 VRSVTNPENNEASIEHSHHTVDIGLD-QPIESHRNTRDLRFLYPRGKLPVPTLPPFNPKP 502
           ++   N   N+ +++H     +  L  Q + S+ N   +  + P G +   T+P + P P
Sbjct: 97  LKKCQNVGMNKDAVQHERGPRNSTLRRQQMSSYYNESRV-MMSPPGNVLNLTMPKYEPNP 155

Query: 503 IYIDMG 520
             ID G
Sbjct: 156 SIIDPG 161


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = +2

Query: 272 PILPSKIDDVQLDPNRRYVRSVTNPENNEASIEH 373
           PI     DD+  +    + +S+TN   +  +++H
Sbjct: 284 PIWTRNADDISQEEYGEFYKSLTNDWEDHLAVKH 317


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,803
Number of Sequences: 336
Number of extensions: 4625
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)