Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N23
         (850 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49132| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.055
SB_38706| Best HMM Match : Ank (HMM E-Value=2.8e-05)                   34   0.17 
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)                    32   0.51 
SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09)                   32   0.51 
SB_36576| Best HMM Match : FerB (HMM E-Value=9)                        32   0.68 
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_41062| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31)               31   1.2  
SB_6685| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31)                31   1.2  
SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)               30   2.7  
SB_33706| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)                 29   6.3  
SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058)            29   6.3  
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)                 28   8.3  
SB_32532| Best HMM Match : RHS_repeat (HMM E-Value=3.2e-06)            28   8.3  
SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)         28   8.3  
SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)                      28   8.3  
SB_19358| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_49132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 35.5 bits (78), Expect = 0.055
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
 Frame = -2

Query: 324 YLRFGSSC-TSSIFEG---RIG-WSA-----VLGARGTLSP*YSHSGSWPACRTVRVIGR 175
           ++ FG SC    I  G    +G W +     ++   G +S    H GSW +CR + ++  
Sbjct: 78  HVEFGGSCRVLGIMSGCGNHVGSWESCRVVGIMSGCGIMSSPGDHVGSWGSCRVLGIMSG 137

Query: 174 CVGGGLKVG 148
           C GGGL++G
Sbjct: 138 C-GGGLRIG 145


>SB_38706| Best HMM Match : Ank (HMM E-Value=2.8e-05)
          Length = 220

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
 Frame = +1

Query: 13  TTHYRESLRFDYPVFNRYNQHVQVFSIQFSSGAVLCSGFVPEVHPADLQATANTAPDNTY 192
           TTH  +S + + P  N  + H+++  IQ     +     +PE+H A L+       +   
Sbjct: 96  TTHTTKSSQKERPGGNESSSHLKIPDIQLEGETLDIDPDIPEIHLAVLEGNLQRLIELVE 155

Query: 193 SATS--------WPGTAMAVSR*QCSSCAKY--RRPSDSSFENRRRAARSKPKVCSQCHQ 342
           S TS        WP    A+   Q   CA+Y  +  ++  FE ++   R +  + S+  +
Sbjct: 156 SGTSVNTPDLEGWPPLHTAIKH-QHYDCAQYLIKHGANDYFERQQEEYRKRLHLSSRIVK 214

Query: 343 SR 348
            R
Sbjct: 215 GR 216


>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
          Length = 1136

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +2

Query: 236 DNVPRAPSTADHPI--LPSKIDDV--QLDPNRRYVRSVTNPENNEASIEHS-HHTVDIGL 400
           + + RA   ADH I  +  K+D    QLD N +Y++ + NP+  +  ++      V    
Sbjct: 253 EEIERAKVAADHLISEVKDKLDIAKEQLDDNAKYIKCLENPDEADKYVKQKIQQRVKRTA 312

Query: 401 DQPIESHR 424
           +  +ESHR
Sbjct: 313 ENLVESHR 320


>SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09)
          Length = 1487

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +2

Query: 236 DNVPRAPSTADHPI--LPSKIDDV--QLDPNRRYVRSVTNPENNEASIEHS-HHTVDIGL 400
           + + RA   ADH I  +  K+D    QLD N +Y++ + NP+  +  ++      V    
Sbjct: 229 EEIERAKVAADHLISEVKDKLDIAKEQLDDNAKYIKCLENPDEADKYVKQKIQQRVKRTA 288

Query: 401 DQPIESHR 424
           +  +ESHR
Sbjct: 289 ENLVESHR 296


>SB_36576| Best HMM Match : FerB (HMM E-Value=9)
          Length = 223

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 22/68 (32%), Positives = 34/68 (50%)
 Frame = -1

Query: 307 ELHVVDFRRKNRMVCGTWRTRNIVTLIQP*RFLASLSHCTCYRALCWRWPEGRLDEPLAR 128
           ELH+  FRR+NRM       R+I++      F     +CT Y+ +CW++ E R+   L  
Sbjct: 64  ELHM--FRRENRMAGKQLPARDILS------FENKRRNCTVYKCVCWQYSE-RMHSSLIE 114

Query: 127 SLSKEQHQ 104
            +S    Q
Sbjct: 115 LVSSYLRQ 122


>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 238 QCSSCAKYRRPSDSSFENRRRAARSKPKVCSQC 336
           QCS+C+K    S S   + R  +  KP +CS C
Sbjct: 762 QCSTCSKSYSTSRSLVRHERSHSSEKPYLCSDC 794


>SB_41062| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31)
          Length = 147

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 238 QCSSCAKYRRPSDSSFENRRRAARSKPKVCSQCHQSRK 351
           QC+ C KY R S S   ++R  +  KP  C +C +  K
Sbjct: 6   QCNECGKYFRYSRSMKSHQRIHSEEKPYQCVECDKFYK 43



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 238 QCSSCAKYRRPSDSSFENRRRAARSKPKVCSQCHQSRK 351
           QC+ C KY R S S   ++R  +  KP  C +C +  K
Sbjct: 62  QCNECGKYFRYSRSMKSHQRIHSEEKPYQCVECDKFYK 99


>SB_6685| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31)
          Length = 147

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 238 QCSSCAKYRRPSDSSFENRRRAARSKPKVCSQCHQSRK 351
           QC+ C KY R S S   ++R  +  KP  C +C +  K
Sbjct: 6   QCNECGKYFRYSRSMKSHQRIHSEEKPYQCVECDKFYK 43



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 238 QCSSCAKYRRPSDSSFENRRRAARSKPKVCSQCHQSRK 351
           QC+ C KY R S S   ++R  +  KP  C +C +  K
Sbjct: 62  QCNECGKYFRYSRSMKSHQRIHSEEKPYQCVECDKFYK 99


>SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)
          Length = 473

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = +2

Query: 341 NPENNEASIEHSHHTVDIGLDQPIESHRNTRDLRFLYPRGKLPVPTLPPFNPKPIYIDMG 520
           +PEN++    +  H V   L  P  +  +TR     +P   LP P+LP   P  I  D  
Sbjct: 24  SPENSDTLYHYCRHLVP-SLPTPGTTTADTRHHHCRHPAPSLPAPSLPA--PGTITADTW 80

Query: 521 NRYRRH 538
             + RH
Sbjct: 81  YHHCRH 86


>SB_33706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 189 VQCDKLARNRYGCIKVTMFLVRQVPQTIRFFLRKSTTCSSIQ 314
           ++CDK+   R+   K TM + R     +R +  K+ T S++Q
Sbjct: 674 IKCDKIQTGRFVYPKNTMMIPRHFQVGLRIYAGKNETLSTLQ 715


>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
          Length = 1413

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = +3

Query: 285 RKSTTCSSIQTEGMFAVSPIQKITRRPLN--IH-IIQLILDLTSRSRATVTQGTCGFCTL 455
           RK++T SS  +    A  P Q +   P +  +H I+ L+L LTS  + T++QG+  + + 
Sbjct: 297 RKASTASSHSSSFRLAKKP-QHVCSNPPSCLLHSIVALLLCLTSDGQLTLSQGSANWSSA 355

Query: 456 EGNC 467
             +C
Sbjct: 356 LQSC 359


>SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058)
          Length = 820

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 449 YPRGKLPVPTLPPFNPKPIYIDMGNRYRRHASEDQEELRQY 571
           YP G L     P  NP+P Y   GN   R+ +    + R Y
Sbjct: 378 YPSGNLQSRYYPSGNPQPRYYPSGNPQPRYYTSGNPQPRYY 418


>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
          Length = 1227

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = +3

Query: 198  DKLARNRYGCIKVTMFLVRQVPQTIRFFLRKSTT------CSSIQTEGMFAVSPIQKI 353
            D ++R+R  C+ V + ++ Q+       L  + T      C+S+   G+ AVS I KI
Sbjct: 890  DPVSRDRRSCLPVHLCILSQLYDAFSVLLDSTETAYLSVGCASVMCLGLCAVSAIMKI 947


>SB_32532| Best HMM Match : RHS_repeat (HMM E-Value=3.2e-06)
          Length = 618

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +2

Query: 449 YPRGKLPVPTLPPFNPKPIYIDMGNRYRRHASEDQEELRQY 571
           YP G L     P  NP+P Y   GN   R+      + R Y
Sbjct: 51  YPSGNLQSRYYPSGNPQPRYYPSGNPQSRYYPSGNPQPRYY 91


>SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)
          Length = 636

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +2

Query: 272 PILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDIGLDQPIESHRNTRDLRFLY 451
           P   + + DV  D   R  R+ +NP N+   IE    T D+G+ + +    NT  +    
Sbjct: 92  PYTATSLYDVIADGTYRVSRTNSNPTNDTFCIEMEVITGDVGVLE-VLCENNTTKVSQTL 150

Query: 452 PRGKLPVPTL 481
             G LPV  +
Sbjct: 151 GMGTLPVDAI 160


>SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 1743

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +3

Query: 426 TQGTCGFCTLEGNCLFQRFLRLTPSQ 503
           T GTC F  + G  LF R LRL PSQ
Sbjct: 230 TSGTCVFLFIFG-ILFDRHLRLRPSQ 254


>SB_19358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 291 STTCSSIQTEGMFAVSPIQK 350
           STTCS++ T G +A++P +K
Sbjct: 89  STTCSAVTTVGGYAITPFRK 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,891,222
Number of Sequences: 59808
Number of extensions: 577603
Number of successful extensions: 1659
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1653
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)