Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N23
         (850 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61240.1 68418.m07681 leucine-rich repeat family protein cont...    31   1.3  
At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical ...    31   1.3  
At2g07880.1 68415.m01007 hypothetical protein                          29   3.0  
At5g48385.1 68418.m05980 expressed protein                             29   5.2  
At5g47280.1 68418.m05829 disease resistance protein (NBS-LRR cla...    29   5.2  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    28   9.0  

>At5g61240.1 68418.m07681 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-0B
           [Lycopersicon esculentum] gi|3894387|gb|AAC78593
          Length = 380

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 556 FLILRRMSSVTVSHINIYWLGVKRRKRWNR 467
           +L    MSS  + H+NIY + + R  RWN+
Sbjct: 157 YLCHHNMSSFQILHLNIYSVVITRNLRWNK 186


>At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical to
           DNA polymerase lambda GI:12053869 from [Arabidopsis
           thaliana]
          Length = 529

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +2

Query: 218 LWLYQG-DNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDI 394
           L LYQ  ++   +   A+  +   KID  ++D  ++ + +++  E+  +  + + ++ D 
Sbjct: 86  LMLYQWLEDSLTSGEKANEDLYVLKIDSEEVDKPKKSLPAISGSEDQSSPQKRTRYSPDA 145

Query: 395 GLDQPIESHRNTR 433
           G  + +ESH NT+
Sbjct: 146 GDFKGVESHSNTQ 158


>At2g07880.1 68415.m01007 hypothetical protein
          Length = 173

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = +2

Query: 365 IEHSHHTVDIGLDQPIESHRNTRDLRFLYPRGKLPVPTLPPFNPKPIYIDMGNRYRRHAS 544
           +E+ HH     LDQ +  H     L F  P    P   LPP + +PI +  G R   H S
Sbjct: 63  VEYHHHH---SLDQSLYQHGRVPPLSFTRPITLPPSRVLPPPSTRPITLPHG-RVPYHHS 118

Query: 545 ED 550
            D
Sbjct: 119 LD 120


>At5g48385.1 68418.m05980 expressed protein
          Length = 558

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -3

Query: 458 LEGTKTAGPLCYGGSRSAGQVQYQLYDVNVQWTPRYFLDW*HCE-HTFGLDRAARRRFSK 282
           +E T++   L    S    Q+Q    ++  Q      L W   E H  GL+R+ +RRF +
Sbjct: 1   MEDTRSVASLMDSTSSKIQQLQKAFAELESQRAVTLNLKWKELEEHFHGLERSLKRRFHE 60

Query: 281 EESDGLRY 258
            E     Y
Sbjct: 61  LEDQEKEY 68


>At5g47280.1 68418.m05829 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 623

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 211 LASLSHCTCYRALCWRWPEGRLDEPLARSLSKEQHQN*T 95
           L SL + TCYR   W W E     P  R  + E+  N T
Sbjct: 581 LTSLCYVTCYREALWMWKEVEKAVPGLRIEATEKWFNMT 619


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 690  YHLNLSNYDSMNIGVHSEIFCFWNFPYSWKISLG 589
            +HL L++ +S NI   + I  F N P  W IS G
Sbjct: 2988 FHLKLNDTESANIAYSNAITLFKNLPKGW-ISWG 3020


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,895,597
Number of Sequences: 28952
Number of extensions: 401866
Number of successful extensions: 1101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)