Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_N22
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1778 + 29451902-29452166,29452665-29452849,29453504-294536... 34 0.17
05_03_0598 - 16020856-16020959,16021079-16021457,16023146-160232... 34 0.17
03_05_0861 - 28348669-28348711,28349471-28349557,28349640-283497... 32 0.52
03_02_0275 + 7042433-7042732,7042864-7043140,7043751-7044231,704... 32 0.52
10_02_0060 - 4808506-4808535,4808564-4809588,4810125-4810292,481... 29 6.5
03_05_0441 + 24350026-24350081,24350186-24351011,24351088-243511... 29 6.5
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 29 6.5
>07_03_1778 +
29451902-29452166,29452665-29452849,29453504-29453693,
29453990-29454168,29454263-29454314,29454426-29454553,
29454920-29455099,29455209-29455276,29455364-29455506,
29455682-29455743,29455874-29455987,29456180-29456320,
29456680-29456832,29456973-29457026,29457102-29457212,
29457339-29457512,29457600-29457680,29457788-29457886,
29457905-29458057
Length = 843
Score = 33.9 bits (74), Expect = 0.17
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +2
Query: 92 IMVHLTEEQKKFYEENGYIVLKNVLSEEDLCSITIEYNNLFNRKNQEKMESSWVGSDHND 271
+ +HLT+E EE LS DLC I N+++ +++S W+G ++
Sbjct: 715 LQIHLTKEP--LVEEYSIAASLWKLSSCDLCEIA--RNSVYQSGFSHRLKSHWIGRNYYK 770
Query: 272 RKHDKN 289
R HD N
Sbjct: 771 RGHDGN 776
>05_03_0598 -
16020856-16020959,16021079-16021457,16023146-16023245,
16023452-16023640,16023992-16024089
Length = 289
Score = 33.9 bits (74), Expect = 0.17
Identities = 23/82 (28%), Positives = 37/82 (45%)
Frame = +1
Query: 583 WDLRKTLVLKKETFILLIRKSSLYRERNR*SPIVGDVVVFSLSTDPRQYSLTTHIGPRRM 762
WDL + + L +E L R+ + ++ R + +V +++ SLT GP R
Sbjct: 15 WDLLRPVQLTEEPDKLSWRRKKMIKDHRRGFDTIATLVAWTIWKKETIGSLTKRAGPGRR 74
Query: 763 LPHAXSSRLMTSVSPLGQPTQP 828
LP + T LGQP +P
Sbjct: 75 LPGLCQGK-RTFGGWLGQPYRP 95
>03_05_0861 -
28348669-28348711,28349471-28349557,28349640-28349784,
28350832-28350900,28351147-28351207,28351375-28351493,
28351659-28351713
Length = 192
Score = 32.3 bits (70), Expect = 0.52
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +2
Query: 104 LTEEQKKFYEENGYIVLKNVLSEEDLCSITIEYNNLFNRKNQEKMESSWVGSDHNDRKHD 283
LT+EQ +F++ NGY+VL + S E++ ++ L + + + DH K+D
Sbjct: 7 LTDEQLRFFDANGYLVLGSFSSAEEVRAMRDRMAELVD--GFDGAGDVFSTKDHRQVKND 64
Query: 284 KNFTVKGIHNLQF 322
F K N+ F
Sbjct: 65 --FFFKSAENISF 75
>03_02_0275 +
7042433-7042732,7042864-7043140,7043751-7044231,
7044943-7045491,7045556-7045680,7045824-7045966
Length = 624
Score = 32.3 bits (70), Expect = 0.52
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = +2
Query: 269 DRKHDKNFTVKGIHNLQFHHAVFSKFIFNDNLLDALEDVMNTKNIIFHHTKAHYKPPEKG 448
D++ F V+ + F F F +D ++D ++ V+N N++ K Y+ E
Sbjct: 487 DQQQQLEFNVERLSG--FLERDFQNFS-DDEVMDTMKHVINLSNVVDRLCKQMYQCIEND 543
Query: 449 AAYPMHQDYHYFPYEKDSM 505
YP+ ++ PY+ +
Sbjct: 544 LLYPLRTPHNIAPYKSKGL 562
>10_02_0060 -
4808506-4808535,4808564-4809588,4810125-4810292,
4811202-4811652
Length = 557
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Frame = +2
Query: 47 P*ADGPYKLADALVFIMVHLTEEQ----KKFYEENGYIVLKNV-----LSEEDLCSITIE 199
P A L+ +VFI++ +Q KKFYE+NG VLK V ++++L IT
Sbjct: 200 PAAKAAVGLSSFIVFIVLIFMVKQHLKLKKFYEQNGGPVLKGVRNIKIYTKKELKQITSN 259
Query: 200 YNN 208
Y++
Sbjct: 260 YSS 262
>03_05_0441 +
24350026-24350081,24350186-24351011,24351088-24351189,
24351278-24351343,24351418-24351483,24351594-24351800,
24351925-24352086
Length = 494
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Frame = +2
Query: 353 NDNLLDAL----EDVMNTKNIIFHHTKAHYKPPEKGAAYPMHQDYH--YFPY 490
+DNL++ L VM ++N HH K +PPEK AA + +D +FP+
Sbjct: 21 DDNLIELLWCNGHVVMQSQN---HHRKLPPRPPEKAAAAAVQEDEAGLWFPF 69
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = +1
Query: 283 QEFYCERHPQPSVPPCRVLQVYLQRQSSGRSRGCNEH*EHYFPSHESSLQAPRKRSSLPN 462
+ + CE P PPC+ + V L+ + R N E + + Q P +R P+
Sbjct: 402 EPYACEPSSLPRYPPCKEIDVKLKYEKHKRKLRANGSVERQTTARKPMSQNPGRRVFTPD 461
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,998,425
Number of Sequences: 37544
Number of extensions: 506443
Number of successful extensions: 1206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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