Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N22
         (876 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)               52   8e-07
SB_51946| Best HMM Match : PhyH (HMM E-Value=0.0025)                   34   0.13 
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.6  
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_3421| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.5  
SB_52980| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_5957| Best HMM Match : Chitin_synth_1 (HMM E-Value=9)               29   6.5  
SB_13296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_53384| Best HMM Match : IF-2B (HMM E-Value=7.6e-08)                 28   8.6  
SB_14691| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_13478| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score = 51.6 bits (118), Expect = 8e-07
 Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 5/152 (3%)
 Frame = +2

Query: 104  LTEEQKKFYEENGYIVLKNVLSEEDLCSITIEYNNLFNRKNQEKMESSWVGSDHNDRKHD 283
            LTE+  +FY  NG+ V++ ++ +E L      +  +   K   K+    V  D + R  +
Sbjct: 1081 LTEKDVEFYNHNGFFVVRKLVDKELLAKYHERFRQICVGK--VKVLGLTVMKDVSMRNSE 1138

Query: 284  KNFTVKGIHNLQFHH--AVFSKFIFNDNLLDALEDVMNTKNIIFHHTKAHYKPPEKG--- 448
                 + I+ +Q +    V  ++     +L  +E  +   N++  HT    KPP+ G   
Sbjct: 1139 FLPGERSINKIQDYQNDEVLFEYCSLPEILKYVECFVGP-NVMAVHTMLINKPPDPGTKT 1197

Query: 449  AAYPMHQDYHYFPYEKDSMVASFLHLDAADPK 544
            + +P+HQD HYFP+   + +++ +H     P+
Sbjct: 1198 SRHPLHQDLHYFPFRPANSLSTLVHYHPRRPR 1229


>SB_51946| Best HMM Match : PhyH (HMM E-Value=0.0025)
          Length = 230

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 38/177 (21%), Positives = 75/177 (42%), Gaps = 20/177 (11%)
 Frame = +2

Query: 128 YEENGYIVLKNVLSEEDLCSITIEYNNLFNRKNQEKMESSWVGSDHNDRKHDKNFTVKGI 307
           +EE GY+++ +VL +E +  +    +    R    +  ++ +  D        N  ++ +
Sbjct: 20  FEEEGYLIINDVLDKEHIQRMKDALDECEERAKHLEKSTNHLTLD--PMSIPGNSLLQRV 77

Query: 308 HNLQFHHAVFSKFIFNDNLLDALEDVMNT-----------------KNIIF-HHTKAHYK 433
           H       VF + I N+ +LD + D++                    NI +    K + K
Sbjct: 78  HIPSLLFPVFEETIKNEKILDIVSDLVRCYKKIEKSEKKFGSGQIGPNIRYIRQDKVNVK 137

Query: 434 PPEKGAAYPM--HQDYHYFPYEKDSMVASFLHLDAADPKNGCLYVYPGFTQTGTSGR 598
            P KG  +P+  HQD+ + P+    +V   + +D  + +NG +  +  FT T   G+
Sbjct: 138 HP-KGTGFPIKWHQDWAFNPHTNQDLVMICISIDDTNIENGPV-DWDRFTSTLVRGK 192


>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/78 (21%), Positives = 27/78 (34%)
 Frame = +2

Query: 263  HNDRKHDKNFTVKGIHNLQFHHAVFSKFIFNDNLLDALEDVMNTKNIIFHHTKAHYKPPE 442
            HN  ++    +    H+ + HH   S      N +     V +     +HHTK H+    
Sbjct: 1137 HNQSQYHHTTSHSAYHHTKCHHTT-SHSTITQNAITQPVTVPSHNQSQYHHTKCHHMTSH 1195

Query: 443  KGAAYPMHQDYHYFPYEK 496
                 P+    H  P  K
Sbjct: 1196 STITQPVTVQSHKMPSHK 1213


>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1468

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = +2

Query: 521  HLDAADPKNGCLYV---YP-GFTQTGTSGRRWC 607
            H+     + GCLY    YP G  QTG  GR WC
Sbjct: 1163 HVTTVPRRRGCLYEGKWYPPGNHQTGYDGRDWC 1195


>SB_3421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 488 YEKDSMVASFLHLDAADPKNGCLYVYPGFTQTGTSGRRWC 607
           Y ++ ++A  L LD +DP+    Y  P  T+TG + RR+C
Sbjct: 5   YSREEVLA--LVLDESDPEYNEDYDNPTTTKTGKNSRRFC 42


>SB_52980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 659

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
 Frame = +2

Query: 107 TEEQKKFYEENGYIVLKNVLSEEDLCSITIEYNNLFNRK-NQEKMESSWVGSDHNDRK-- 277
           +E +   + ++  + LK++ S E L  +   + +  + K N  K E+ W+G+ + DRK  
Sbjct: 458 SEIKMTMFADDTTLFLKDMNSLEKLLELLRIFQSYSSLKTNLTKSEAGWLGAKNKDRKRQ 517

Query: 278 -------HDKNFTVKGIHNLQFHHAVFSKFIFNDN 361
                  H K  T+ GI+   ++  ++ +  F  N
Sbjct: 518 GIKWVDLHHKGITILGIY-FSYNERLYDENNFKRN 551


>SB_5957| Best HMM Match : Chitin_synth_1 (HMM E-Value=9)
          Length = 416

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +1

Query: 298 ERHPQPSVPPCRVLQVYLQRQSSGRSRGCNEH*EHYFPSHESSLQAPRKRSSLPNAPRLS 477
           +R    S+PP +     L     G+S   N+H    F S E ++  P  +   P  P ++
Sbjct: 166 QRKDSQSMPPLKATNGRLVESDIGKSEMLNQHFRESF-SDEDTVSIPLLKRRFPQTPSIA 224

Query: 478 LFP--VRKRLNGCVFLA 522
           +    VRK L  C+ L+
Sbjct: 225 VTEEGVRKLL-ACLKLS 240


>SB_13296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 488 YEKDSMVASFLHLDAADPKNGCLYVYPGFTQTGTSGRRWC 607
           Y ++ ++A  L LD +DP+    Y  P  T+TG + RR+C
Sbjct: 5   YSREEVLA--LVLDDSDPEYNEDYDNPTTTKTGKNSRRFC 42


>SB_53384| Best HMM Match : IF-2B (HMM E-Value=7.6e-08)
          Length = 355

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 27/102 (26%), Positives = 54/102 (52%)
 Frame = -3

Query: 499 VFFVREIVIVLVHWVSCSFFGGLVVSFRVMENNVLSVHYILESVQKIVVEDKLGEHGMVE 320
           V+ V  + +VLV +V    + GLVV   ++   VL V+ +L     +VV   L  + ++ 
Sbjct: 214 VYVVLVVYVVLVVYVGLVVYVGLVVYVVLVVYVVLVVYVVLVVYVVLVVYVVLVVYVVLV 273

Query: 319 LKVVDAFHSKILVMFPVVMITADPGALHLFLVLPVEEIVIFY 194
           + VV   +  +LV++ V+++      L +++VL V  +++ Y
Sbjct: 274 VYVVLVVY-VVLVVYVVLVVYV---VLVVYVVLVVYVVLVVY 311


>SB_14691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +2

Query: 110 EEQKKFYEENGYIVLKNVLSEEDLCSITIEYNNLFNRKNQEKMESSWVGSDHN 268
           EE ++  EENG +VLK V S E+   +T E +++   ++ ++ + +    D N
Sbjct: 75  EELERSEEENGIVVLKKVESSEEDSQVT-EDDDMKQAEDHKEEDEAAKDDDKN 126


>SB_13478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 488 YEKDSMVASFLHLDAADPKNGCLYVYPGFTQTGTSGRRWC 607
           Y ++ ++A  L LD +DP+    Y  P  T+TG + RR+C
Sbjct: 5   YSREEVLA--LVLDDSDPEYNEDYDNPTTTKTGKTSRRFC 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,507,741
Number of Sequences: 59808
Number of extensions: 586522
Number of successful extensions: 1434
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)