Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_N22
(876 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g01490.1 68415.m00072 phytanoyl-CoA dioxygenase (PhyH) family... 35 0.062
At2g38280.2 68415.m04702 AMP deaminase, putative / myoadenylate ... 31 1.3
At2g38280.1 68415.m04701 AMP deaminase, putative / myoadenylate ... 31 1.3
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel... 29 3.1
At2g41020.2 68415.m05066 WW domain-containing protein contains P... 29 5.4
At2g41020.1 68415.m05067 WW domain-containing protein contains P... 29 5.4
At2g26710.1 68415.m03204 cytochrome P450, putative 28 7.1
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 28 9.4
At3g30848.1 68416.m03974 hypothetical protein contains similarit... 28 9.4
At1g79570.1 68414.m09276 protein kinase family protein low simil... 28 9.4
>At2g01490.1 68415.m00072 phytanoyl-CoA dioxygenase (PhyH) family
protein contains Pfam profile PF05721: Phytanoyl-CoA
dioxygenase (PhyH); weak similarity to Phytanoyl-CoA
dioxygenase, peroxisomal precursor (EC 1.14.11.18)
(Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid
oxidase) (Swiss-Prot:O14832) [Homo sapiens]
Length = 283
Score = 35.1 bits (77), Expect = 0.062
Identities = 36/188 (19%), Positives = 72/188 (38%), Gaps = 27/188 (14%)
Frame = +2
Query: 104 LTEEQKKFYEENGYIVLKNVLSEEDLCSITIEYNNLFNR-----------KNQEKMESSW 250
LT +Q F+ GY+V+++ SE+++ + + L N+ KNQ+ ++
Sbjct: 7 LTPDQLDFFHSQGYLVIESFASEDEIRGLRKRMDELLNQFDCSVSSIFSTKNQKHTTDNY 66
Query: 251 ---------------VGSDHNDRKHDKNFTVKGI-HNLQFHHAVFSKFIFNDNLLDALED 382
D K K ++ + H L ++ F ++ +L
Sbjct: 67 FFESAEKISFFFEEKAFGDDGKLKQPKQLSINKVGHALHELDPLYKDFTYSSKF-SSLAS 125
Query: 383 VMNTKNIIFHHTKAHYKPPEKGAAYPMHQDYHYFPYEKDSMVASFLHLDAADPKNGCLYV 562
+ + + + +K P G HQD + + S ++ L+ + NGCL+
Sbjct: 126 SLGYRRPVVMQSMYIFKQPGIGGEVVPHQDNSFVYTDPQSCTGLWIALEDSTLVNGCLWA 185
Query: 563 YPGFTQTG 586
PG + G
Sbjct: 186 IPGSHKNG 193
>At2g38280.2 68415.m04702 AMP deaminase, putative / myoadenylate
deaminase, putative similar to SP|P15274 AMP deaminase
(EC 3.5.4.6) (Myoadenylate deaminase) {Saccharomyces
cerevisiae}; contains Pfam profile PF00962:
Adenosine/AMP deaminase
Length = 839
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +2
Query: 92 IMVHLTEEQKKFYEENGYIVLKNVLSEEDLCSITIEYNNLFNRKNQEKMESSWVGSDHND 271
+ +HLT+E EE LS DLC I N+++ ++S W+G D+
Sbjct: 739 LQIHLTKEP--LVEEYSIAASVWKLSACDLCEIA--RNSVYQSGFSHALKSHWIGKDYYK 794
Query: 272 RKHDKN 289
R D N
Sbjct: 795 RGPDGN 800
>At2g38280.1 68415.m04701 AMP deaminase, putative / myoadenylate
deaminase, putative similar to SP|P15274 AMP deaminase
(EC 3.5.4.6) (Myoadenylate deaminase) {Saccharomyces
cerevisiae}; contains Pfam profile PF00962:
Adenosine/AMP deaminase
Length = 839
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +2
Query: 92 IMVHLTEEQKKFYEENGYIVLKNVLSEEDLCSITIEYNNLFNRKNQEKMESSWVGSDHND 271
+ +HLT+E EE LS DLC I N+++ ++S W+G D+
Sbjct: 739 LQIHLTKEP--LVEEYSIAASVWKLSACDLCEIA--RNSVYQSGFSHALKSHWIGKDYYK 794
Query: 272 RKHDKN 289
R D N
Sbjct: 795 RGPDGN 800
>At1g58230.1 68414.m06618 WD-40 repeat family protein /
beige-related contains Pfam PF00400: WD domain, G-beta
repeat; similar to Lipopolysaccharide-responsive and
beige-like anchor protein (CDC4-like protein)
(Beige-like protein) (SP:P50851) [Homo sapiens}
Length = 1280
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 110 EEQKKFYEENGYIVLKNVLSEEDLCSITIEYNNLFNRKNQEKMESSW 250
EEQ++ E +L++++ E S T NN+ NR ++ E SW
Sbjct: 278 EEQQQNVTEKWIHMLRSLMDERGPWSATPFPNNILNRWKLDRTEDSW 324
>At2g41020.2 68415.m05066 WW domain-containing protein contains Pfam
domain PF00397: WW domain
Length = 382
Score = 28.7 bits (61), Expect = 5.4
Identities = 25/104 (24%), Positives = 45/104 (43%)
Frame = +2
Query: 353 NDNLLDALEDVMNTKNIIFHHTKAHYKPPEKGAAYPMHQDYHYFPYEKDSMVASFLHLDA 532
++NL + L+ + + I+ A PE +A ++ P++ ++ +DA
Sbjct: 143 SNNLPEYLKQKLKARGILRDGAGAVTSNPEDTSAVSWNRQAT-LPFQANASTLPLGWVDA 201
Query: 533 ADPKNGCLYVYPGFTQTGTSGRRWC*RRKLSFC*SEKVPYIESE 664
DP +G Y Y TGT +W +LS+ S P + E
Sbjct: 202 KDPASGATYYYN--QHTGTC--QWERPVELSYATSSAPPVLSKE 241
>At2g41020.1 68415.m05067 WW domain-containing protein contains Pfam
domain PF00397: WW domain
Length = 463
Score = 28.7 bits (61), Expect = 5.4
Identities = 25/104 (24%), Positives = 45/104 (43%)
Frame = +2
Query: 353 NDNLLDALEDVMNTKNIIFHHTKAHYKPPEKGAAYPMHQDYHYFPYEKDSMVASFLHLDA 532
++NL + L+ + + I+ A PE +A ++ P++ ++ +DA
Sbjct: 143 SNNLPEYLKQKLKARGILRDGAGAVTSNPEDTSAVSWNRQAT-LPFQANASTLPLGWVDA 201
Query: 533 ADPKNGCLYVYPGFTQTGTSGRRWC*RRKLSFC*SEKVPYIESE 664
DP +G Y Y TGT +W +LS+ S P + E
Sbjct: 202 KDPASGATYYYN--QHTGTC--QWERPVELSYATSSAPPVLSKE 241
>At2g26710.1 68415.m03204 cytochrome P450, putative
Length = 520
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = -3
Query: 412 MENNVLSVHYILESVQKIVVE--DKLGEHGMVELKVVDAF 299
MEN L V +L+SV +V + DKL E+G VE+ V + F
Sbjct: 165 MENLKLLVPVVLKSVTDMVDKWSDKLSENGEVEVDVYEWF 204
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 362 LLDALEDVMNTKNIIFHHTKAHYKPPEKGAA 454
L+ LE + K++IF T+ +PP+KGAA
Sbjct: 80 LVRELEKKFSGKDVIFVTTRRIMRPPKKGAA 110
>At3g30848.1 68416.m03974 hypothetical protein contains similarity
to hypothetical proteins
Length = 156
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 802 RRWSSAGCCXHXAAYVADRCE 740
+ WSS+GCC +YVA E
Sbjct: 32 KMWSSSGCCKFVGSYVASTKE 52
>At1g79570.1 68414.m09276 protein kinase family protein low
similarity to EDR1 [Arabidopsis thaliana] GI:11127925
Length = 1248
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 152 LKNVLSEEDLCSITIEYNNLFNRKNQEKM 238
L +V SEEDL ++ EYN + NR +K+
Sbjct: 243 LVSVSSEEDLQNMLEEYNEMENRGGSQKL 271
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,247,992
Number of Sequences: 28952
Number of extensions: 408882
Number of successful extensions: 1123
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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