Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N21
         (911 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              29   6.9  

>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +2

Query: 530 PXPXXXPPXXPXXXXXYPRPPDSPFXXGLXXXPXMIXXP*WSLDHPPP*NXP 685
           P P   PP  P     YP PP+ P+       P     P  +  +PPP N P
Sbjct: 163 PPPNPPPPNAPYPPPPYPPPPNPPY----PPPPNPPYPPPPNAPNPPPPNPP 210



 Score = 29.9 bits (64), Expect = 3.0
 Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
 Frame = +2

Query: 518 FPXXPX-PXXXPPXXPXXXXXYPRPPDSPFXXGLXXXPXMIXXP*WSLDHPPP*NXP 685
           +P  P  P   PP  P     YP PP+ P        P     P  +  +PPP N P
Sbjct: 140 YPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPP--NPPYPPPPNPP 194



 Score = 29.5 bits (63), Expect = 3.9
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
 Frame = +2

Query: 518 FPXXPXPXXXPPXX----PXXXXXYPRPPDSPFXXGLXXXPXMIXXP*WSLDHPPP 673
           +P  P P   PP      P     YP PP+ P+   L   P     P  +  +PPP
Sbjct: 124 YPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPP--NAPYPPP 177



 Score = 29.5 bits (63), Expect = 3.9
 Identities = 17/55 (30%), Positives = 21/55 (38%)
 Frame = +2

Query: 521 PXXPXPXXXPPXXPXXXXXYPRPPDSPFXXGLXXXPXMIXXP*WSLDHPPP*NXP 685
           P    P   PP  P     YP PP+ P+       P     P  +  +PPP N P
Sbjct: 168 PPPNAPYPPPPYPPPPNPPYPPPPNPPY----PPPPNAPNPPPPNPPYPPPPNAP 218



 Score = 29.1 bits (62), Expect = 5.2
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
 Frame = +2

Query: 518 FPXXPXPXXXPPXXPXXXXXYPRPPDSPF----XXGLXXXPXMIXXP*WSLDHPPP*NXP 685
           +P  P P   PP  P     YP PP++P+           P     P  +  +PPP N P
Sbjct: 99  YPPYPPP---PPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPP 155


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +3

Query: 540  PPXPPPPXXXXXGTRGPRTLPLXXG*XG 623
            PP PPPP     G  GP  LP   G  G
Sbjct: 1662 PPPPPPPAPGPPGPDGPMGLPGPQGPDG 1689


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,566,936
Number of Sequences: 59808
Number of extensions: 332952
Number of successful extensions: 1037
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)