Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N21
         (911 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    29   4.3  
At4g15100.1 68417.m02321 serine carboxypeptidase S10 family prot...    28   9.9  

>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/55 (30%), Positives = 20/55 (36%)
 Frame = +2

Query: 521 PXXPXPXXXPPXXPXXXXXYPRPPDSPFXXGLXXXPXMIXXP*WSLDHPPP*NXP 685
           P  P P   PP  P     YP PP  P        P +   P     +PPP + P
Sbjct: 391 PPPPPPPPPPPPPPPPPYVYPSPPPPP----PSPPPYVYPPPPPPYVYPPPPSPP 441


>At4g15100.1 68417.m02321 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II chains A and B
           (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)]
          Length = 407

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 720 GXPIPSPWKPXYNPXQXNKFXXHPLGXLFYXFHGPG 827
           G PI + W+P Y+  Q + +     G  F  F G G
Sbjct: 340 GLPIKTAWRPWYHEKQVSGWVQEYDGLTFATFRGAG 375


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,928,342
Number of Sequences: 28952
Number of extensions: 254339
Number of successful extensions: 1244
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)