Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N17
         (888 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    24   1.4  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    24   1.4  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    24   1.4  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   5.6  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   5.6  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   7.4  

>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 38  DLFFFSLSTFVSERFTKMAKRTKKV 112
           D+F   LST ++ RFT++  RT+ +
Sbjct: 231 DVFVMLLSTALAYRFTQVTDRTQSM 255


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 38  DLFFFSLSTFVSERFTKMAKRTKKV 112
           D+F   LST ++ RFT++  RT+ +
Sbjct: 231 DVFVMLLSTALAYRFTQVTDRTQSM 255


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 38  DLFFFSLSTFVSERFTKMAKRTKKV 112
           D+F   LST ++ RFT++  RT+ +
Sbjct: 231 DVFVMLLSTALAYRFTQVTDRTQSM 255


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +1

Query: 52  FSVNFCIGEVYQNGQTYQKGWN--YWQ 126
           F+ N+   + Y N   YQ+G++  Y+Q
Sbjct: 211 FNFNYQYNQAYSNYNNYQEGFSCQYYQ 237


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +1

Query: 52  FSVNFCIGEVYQNGQTYQKGWN--YWQ 126
           F+ N+   + Y N   YQ+G++  Y+Q
Sbjct: 231 FNFNYQYNQAYSNYNNYQEGFSCQYYQ 257


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +2

Query: 125 KYGTR-YGASLRKMVKKMEVTQHAKYTCSFCGK 220
           KY  R +  S   ++ +   T    Y+C  CGK
Sbjct: 83  KYCNRQFTKSYNLLIHERTHTDERPYSCDICGK 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,004
Number of Sequences: 336
Number of extensions: 3145
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24617054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)