Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_N17
(888 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC) 133 2e-31
At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB) si... 126 2e-29
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 32 0.44
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 32 0.44
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 27 1.6
At4g11385.1 68417.m01836 hypothetical protein 30 1.8
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 30 1.8
At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identic... 30 1.8
At2g32770.2 68415.m04012 purple acid phosphatase (PAP13) identic... 30 1.8
At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identic... 30 1.8
At5g21160.1 68418.m02528 La domain-containing protein / proline-... 30 2.4
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 30 2.4
At1g61080.1 68414.m06877 proline-rich family protein 30 2.4
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 30 2.4
At4g13390.1 68417.m02092 proline-rich extensin-like family prote... 29 3.1
At1g31310.1 68414.m03831 hydroxyproline-rich glycoprotein family... 29 5.4
At1g02405.1 68414.m00187 proline-rich family protein contains pr... 29 5.4
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 28 7.2
At1g23720.1 68414.m02994 proline-rich extensin-like family prote... 28 7.2
At5g26080.1 68418.m03103 proline-rich family protein contains pr... 28 9.5
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 28 9.5
>At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)
Length = 92
Score = 133 bits (321), Expect = 2e-31
Identities = 58/88 (65%), Positives = 69/88 (78%)
Frame = +2
Query: 89 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 268
MAKRTKKVGI GKYGTRYGAS+RK +KKMEV+QH+KY C FCGK +KR VGIW CK C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60
Query: 269 KRTVAGGAWVFSTTAASSCRSAVRRLRE 352
+ AGGA+ +T +A + RS +RRLRE
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLRE 88
>At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB)
similar to putative 60S ribosomal protein L37a
GB:AAD28753 [Gossypium hirsutum]
Length = 92
Score = 126 bits (304), Expect = 2e-29
Identities = 56/88 (63%), Positives = 66/88 (75%)
Frame = +2
Query: 89 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 268
M KRTKK I GKYGTRYGASLRK +KKMEV+QH KY C FCGK ++KR VGIW CK C
Sbjct: 1 MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60
Query: 269 KRTVAGGAWVFSTTAASSCRSAVRRLRE 352
+ AGGA+ +T +A + RS +RRLRE
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLRE 88
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 32.3 bits (70), Expect = 0.44
Identities = 20/48 (41%), Positives = 21/48 (43%)
Frame = +2
Query: 602 PXXEPLXPPKXXFTXPXXPPFYXPRSXGEGXKGFFPP*XXPPPPPXXK 745
P P PPK P PP P+S K FPP PPPPP K
Sbjct: 146 PSPSPSRPPKRS-RGPPRPPT-RPKSPPP-RKSSFPPSRSPPPPPAKK 190
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 32.3 bits (70), Expect = 0.44
Identities = 20/48 (41%), Positives = 21/48 (43%)
Frame = +2
Query: 602 PXXEPLXPPKXXFTXPXXPPFYXPRSXGEGXKGFFPP*XXPPPPPXXK 745
P P PPK P PP P+S K FPP PPPPP K
Sbjct: 146 PSPSPSRPPKRS-RGPPRPPT-RPKSPPP-RKSSFPPSRSPPPPPAKK 190
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 27.5 bits (58), Expect(2) = 1.6
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = +2
Query: 602 PXXEPLXPPKXXFTXPXXPPFYXPRSXGEGXKGFFPP*XXPPPP 733
P P+ P P PP Y P PP PPPP
Sbjct: 535 PPPPPVHSPPPPVHSPPPPPVYSPPPPPPPVHSPPPPVFSPPPP 578
Score = 21.4 bits (43), Expect(2) = 1.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 707 PP*XXPPPPP 736
PP PPPPP
Sbjct: 607 PPVHSPPPPP 616
>At4g11385.1 68417.m01836 hypothetical protein
Length = 143
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = +2
Query: 389 KKKKKKXXKKKXKXKKXKK 445
KKKKKK KKK K KK KK
Sbjct: 106 KKKKKKKKKKKKKKKKKKK 124
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = +2
Query: 389 KKKKKKXXKKKXKXKKXKK 445
KKKKKK KKK K KK KK
Sbjct: 107 KKKKKKKKKKKKKKKKKKK 125
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = +2
Query: 389 KKKKKKXXKKKXKXKKXKK 445
KKKKKK KKK K KK KK
Sbjct: 108 KKKKKKKKKKKKKKKKKKK 126
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 389 KKKKKKXXKKKXKXKKXKK 445
+KKKKK KKK K KK KK
Sbjct: 105 EKKKKKKKKKKKKKKKKKK 123
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 656 PPFYXPRSXGEGXKGFFPP*XXPPPP 733
PP+Y P G G +G PP PPPP
Sbjct: 6 PPYYSPPRRGYGGRGRSPP---PPPP 28
>At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identical
to purple acid phosphatase (PAP13) [Arabidopsis
thaliana] GI:20257489; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 545
Score = 30.3 bits (65), Expect = 1.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 73 GEVYQNGQTYQKGWNYW 123
G Y +G+TYQ W+YW
Sbjct: 261 GSCYSSGETYQPRWDYW 277
>At2g32770.2 68415.m04012 purple acid phosphatase (PAP13) identical
to purple acid phosphatase (PAP13) [Arabidopsis
thaliana] GI:20257489; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 428
Score = 30.3 bits (65), Expect = 1.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 73 GEVYQNGQTYQKGWNYW 123
G Y +G+TYQ W+YW
Sbjct: 180 GSCYSSGETYQPRWDYW 196
>At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identical
to purple acid phosphatase (PAP13) [Arabidopsis
thaliana] GI:20257489; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 516
Score = 30.3 bits (65), Expect = 1.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 73 GEVYQNGQTYQKGWNYW 123
G Y +G+TYQ W+YW
Sbjct: 261 GSCYSSGETYQPRWDYW 277
>At5g21160.1 68418.m02528 La domain-containing protein /
proline-rich family protein contains proline-rich
extensin domains, INTERPRO:IPR002965, PF05383: La domain
Length = 826
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 678 PXGRVXK-GFSPXKXXPPPPPGXXXXXPFLXXPFPP 782
P GR K G + PPPPP P+ PFPP
Sbjct: 105 PSGRHSKPGPRSNQNGPPPPPYLVHAVPYHPPPFPP 140
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/55 (30%), Positives = 19/55 (34%)
Frame = +3
Query: 615 PXXPPKXXLXPPXXLXFIXHVPXGRVXKGFSPXKXXPPPPPGXXXXXPFLXXPFP 779
P PK PP F+ H P + P PPP P P L P P
Sbjct: 100 PPPTPKKSPSPPSLTPFVPH-PTPKKSPSPPPTPSLPPPAPKKSPSTPSLPPPTP 153
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/53 (28%), Positives = 17/53 (32%)
Frame = +3
Query: 624 PPKXXLXPPXXLXFIXHVPXGRVXKGFSPXKXXPPPPPGXXXXXPFLXXPFPP 782
PP PP + P F P K PPPP + P PP
Sbjct: 474 PPPPPPLPPAVMPLKHFAPPPPTPPAFKPLKGSAPPPPPPPPLPTTIAAPPPP 526
Score = 24.6 bits (51), Expect(2) = 9.8
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 686 EGXKGFFPP*XXPPPPP 736
E FPP PPPPP
Sbjct: 409 ENSSQLFPPPPPPPPPP 425
Score = 21.4 bits (43), Expect(2) = 9.8
Identities = 11/47 (23%), Positives = 12/47 (25%)
Frame = +2
Query: 722 PPPPPXXKXXFXFFXAXXXXXXXXXXXXPLAPXXFRXXGETXXSPPP 862
PPPPP F P+A PPP
Sbjct: 417 PPPPPPPPPPLSFIKTASLPLPSPPPTPPIADIAISMPPPPPPPPPP 463
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = +2
Query: 602 PXXEPLXPPKXXFTXPXXPPFYXPRSXGEGXKGFFPP*XXPPPPPXXK 745
P P PPK + PP P G PP PPPPP K
Sbjct: 680 PPPPPPPPPKANISNAPKPPAPPPLPPSSTRLGAPPP---PPPPPLSK 724
>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 429
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +2
Query: 623 PPKXXFTXPXXPPFYXPRSXGEGXKGFFPP--*XXPPPPP 736
PP ++ P PP+Y P E K PP PPPPP
Sbjct: 177 PPPYVYSSPPPPPYYSPSPKVE-YKSPPPPYVYSFPPPPP 215
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +2
Query: 623 PPKXXFTXPXXPPFYXPRSXGEGXKGFFPP--*XXPPPPP 736
PP ++ P PP+Y P S K PP PPPPP
Sbjct: 151 PPPYIYSSPPPPPYYSP-SPKVDYKSPPPPYVYSSPPPPP 189
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +2
Query: 623 PPKXXFTXPXXPPFYXPRSXGEGXKGFFPP--*XXPPPPP 736
PP + P PP+Y P S K PP PPPPP
Sbjct: 341 PPPYVYNSPPPPPYYSP-SPTVNYKSPPPPYVYNSPPPPP 379
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +2
Query: 623 PPKXXFTXPXXPPFYXPRSXGEGXKGFFPP--*XXPPPPP 736
PP ++ P PP+Y P S G K P PPPPP
Sbjct: 203 PPPYVYSFPPPPPYYSP-SPKVGYKSPPAPYVYSSPPPPP 241
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +2
Query: 623 PPKXXFTXPXXPPFYXPRSXGEGXKGFFPP--*XXPPPPP 736
PP + P PP+Y P E K PP PPPPP
Sbjct: 367 PPPYVYNSPPPPPYYSPFPKVE-YKSPPPPYIYNSPPPPP 405
>At1g31310.1 68414.m03831 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965;
Length = 383
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 708 PXKXXPPPPPGXXXXXPFLXXPFPP 782
P + PPPPP P L P PP
Sbjct: 219 PLQPPPPPPPSQPLPRPLLLPPPPP 243
>At1g02405.1 68414.m00187 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 134
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +2
Query: 602 PXXEPLXPPKXXFTXPXXPPFYXPRSXGEGXKGFFPP*XXPPPPPXXKXXFXF 760
P + PP P P P S K PP PPPPP + F
Sbjct: 43 PCLQNQPPPPPSPPPPSCTPSPPPPSPPPPKKSSCPPSPLPPPPPPPPPNYVF 95
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Frame = +2
Query: 602 PXXEPLXPPKXXFTXPXXPPFY--XPRSXGEGXKGFFPP*XXPPPPP 736
P P PP F+ P P+Y P PP PPPP
Sbjct: 538 PPPPPHSPPPPQFSPPPPEPYYYSSPPPPHSSPPPHSPPPPHSPPPP 584
>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 895
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 623 PPKXXFTXPXXPPFYXPRSXGEGXKGFFPP*XXPPPPP 736
PP ++ P PP+Y P E K PP PPP
Sbjct: 735 PPPYVYSSPPPPPYYSPSPKVE-YKSPPPPYVYSSPPP 771
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 623 PPKXXFTXPXXPPFYXPRSXGEGXKGFFPP*XXPPPPP 736
PP ++ P PP+Y P E K PP PPP
Sbjct: 786 PPPYVYSSPPPPPYYSPSPKVE-YKSPPPPYVYSSPPP 822
>At5g26080.1 68418.m03103 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 141
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/37 (32%), Positives = 13/37 (35%)
Frame = +2
Query: 623 PPKXXFTXPXXPPFYXPRSXGEGXKGFFPP*XXPPPP 733
PP P PP Y P +PP PPP
Sbjct: 67 PPPPPIYSPPPPPIYPPPIYSPPPPPIYPPPIYSPPP 103
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 615 PXXPPKXXLXPPXXLXFIXH-VPXGRVXKGFSPXKXXPPPPP 737
P PP + PP L +P + SP + PPPPP
Sbjct: 121 PLSPPPPAITPPPPLATTPPALPPKPLPPPLSPPQTTPPPPP 162
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,698,748
Number of Sequences: 28952
Number of extensions: 292542
Number of successful extensions: 1485
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -