Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N12
         (908 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DC1997 Cluster: UPI0000DC1997 related cluster; n...    33   7.6  
UniRef50_P17147 Cluster: Major DNA-binding protein; n=6; Cytomeg...    33   7.6  

>UniRef50_UPI0000DC1997 Cluster: UPI0000DC1997 related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC1997 UniRef100 entry -
           Rattus norvegicus
          Length = 529

 Score = 33.5 bits (73), Expect = 7.6
 Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -2

Query: 907 DGDPPGXGXGXGVQXXXGNPXGXV--GQGRDHGXRD-NQGGF-QGRP 779
           +G P G   G G     G P G    G+GRD G RD  +GGF  GRP
Sbjct: 448 EGGPGGMRGGRGGLMDCGGPQGMFRGGRGRDRGGRDVERGGFGGGRP 494


>UniRef50_P17147 Cluster: Major DNA-binding protein; n=6;
           Cytomegalovirus|Rep: Major DNA-binding protein - Human
           cytomegalovirus (strain AD169) (HHV-5) (Human
           herpesvirus 5)
          Length = 1235

 Score = 33.5 bits (73), Expect = 7.6
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -2

Query: 907 DGDPPGXGXGXGVQXXXGNPXGXVGQGRDHGXRDNQGGFQGR 782
           DG P G   G G +   G P   +G GR  G   + GG  GR
Sbjct: 544 DGVPGGGAGGGGGRDVSGGPSDGLGGGRGGGGGGDSGGMMGR 585


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 399,979,200
Number of Sequences: 1657284
Number of extensions: 3941808
Number of successful extensions: 6466
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6412
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82801539422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)