Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N12
         (908 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)                      32   0.56 
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    29   6.9  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               29   6.9  
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              29   6.9  

>SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)
          Length = 800

 Score = 32.3 bits (70), Expect = 0.56
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -2

Query: 904 GDPPGXGXGXGVQXXXGNPXGXVGQGRDHGXRDNQGGFQG 785
           G  PG G   G     G+P G    G DHG  D+ GG  G
Sbjct: 337 GGDPGGGDPGGGDPGGGDPGGGDPGGGDHGGGDHGGGDHG 376



 Score = 29.5 bits (63), Expect = 3.9
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = -2

Query: 904 GDPPGXGXGXGVQXXXGNPXGXVGQGRDHGXRDNQGGFQG 785
           G  PG G   G     G+P G    G DHG  D+  G  G
Sbjct: 342 GGDPGGGDPGGGDPGGGDPGGGDHGGGDHGGGDHGDGDHG 381



 Score = 29.1 bits (62), Expect = 5.2
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -2

Query: 904 GDPPGXGXGXGVQXXXGNPXGXVGQGRDHGXRDNQGGFQG 785
           GDP G   G G      +  G  G G DHG  D+ GG  G
Sbjct: 353 GDPGGGDPGGGDHGGGDHGGGDHGDG-DHGGGDHGGGDHG 391



 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = -2

Query: 904 GDPPGXGXGXGVQXXXGNPXGXVGQGRDHGXRDNQGGFQG 785
           G  PG G   G     G+  G    G DHG  D+ GG  G
Sbjct: 347 GGDPGGGDPGGGDPGGGDHGGGDHGGGDHGDGDHGGGDHG 386



 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -2

Query: 904 GDPPGXGXGXGVQXXXGNPXGXVGQGRDHGXRDNQGGFQG 785
           GDP G   G G      +  G  G G DHG  D+ GG  G
Sbjct: 358 GDPGGGDHGGGDHGGGDHGDGDHGGG-DHGGGDHGGGDHG 396


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 18/47 (38%), Positives = 18/47 (38%)
 Frame = -2

Query: 907 DGDPPGXGXGXGVQXXXGNPXGXVGQGRDHGXRDNQGGFQGRPVXLG 767
           D  PPG   G G Q   GNP G  G     G      G  G P  LG
Sbjct: 320 DVGPPGNPGGPGYQGNHGNPAGPQGPNGQPG----PPGINGPPGPLG 362



 Score = 28.7 bits (61), Expect = 6.9
 Identities = 18/47 (38%), Positives = 18/47 (38%)
 Frame = -2

Query: 907 DGDPPGXGXGXGVQXXXGNPXGXVGQGRDHGXRDNQGGFQGRPVXLG 767
           D  PPG   G G Q   GNP G  G     G      G  G P  LG
Sbjct: 405 DVGPPGNPGGPGYQGNHGNPAGPQGPNGQPG----PPGINGPPGPLG 447



 Score = 28.3 bits (60), Expect = 9.1
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = -2

Query: 907 DGDPPGXGXGXGVQXXXGNPXGXVGQGRDHGXRDNQGGFQGRPVXLG 767
           +  PPG   G G Q   GNP G  G     G      G  G P  LG
Sbjct: 490 EAGPPGNPGGPGYQGNHGNPAGPQGPNGQPG----PPGINGPPGPLG 532


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = -2

Query: 904 GDPPGXGXGXGVQXXXGN-PXGXVGQGRDHGXRDNQGGFQGR 782
           G  PG G G G     G  P G  G+G   G    QGG  GR
Sbjct: 261 GQGPGGGWGRGQGRGMGRGPGGGWGRGSGGGWGRMQGGGMGR 302


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = -2

Query: 904 GDPPGXGXGXGVQXXXGN-PXGXVGQGRDHGXRDNQGGFQGR 782
           G  PG G G G     G  P G  G+G   G    QGG  GR
Sbjct: 17  GQGPGGGWGRGQGGGMGRGPGGGWGRGSGGGWGRMQGGGMGR 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,444,854
Number of Sequences: 59808
Number of extensions: 123488
Number of successful extensions: 202
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)