Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_N11
(820 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 245 2e-65
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 245 2e-65
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 240 9e-64
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 47 2e-05
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa... 32 0.40
At3g09000.1 68416.m01053 proline-rich family protein 32 0.40
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 30 2.1
At3g50610.1 68416.m05534 hypothetical protein 29 2.8
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 2.8
At1g33410.1 68414.m04136 expressed protein 29 2.8
At5g04470.1 68418.m00445 expressed protein 29 3.7
At1g58220.1 68414.m06612 myb family transcription factor contain... 29 3.7
At5g13260.1 68418.m01523 expressed protein 28 6.5
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 28 8.6
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 8.6
At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family... 28 8.6
At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family... 28 8.6
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 245 bits (600), Expect = 2e-65
Identities = 118/213 (55%), Positives = 157/213 (73%), Gaps = 2/213 (0%)
Frame = +1
Query: 103 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 282
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 283 MRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAP 456
M+++++ H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP
Sbjct: 61 MKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120
Query: 457 LSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML 636
+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180
Query: 637 NISPFSYGLVVKQVYDSGTIFAPEILDIKPXDL 735
I PFSYGLVV+ VYD+G++F+PE+LD+ L
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQL 213
Score = 36.7 bits (81), Expect = 0.018
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 723 TRXSPVAKFQAGVANVAALSLAIGYPTIASAP 818
T V KF +G++ V +L+LA+ YPT+A+AP
Sbjct: 209 TEDQLVEKFASGISMVTSLALAVSYPTLAAAP 240
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 245 bits (600), Expect = 2e-65
Identities = 118/213 (55%), Positives = 157/213 (73%), Gaps = 2/213 (0%)
Frame = +1
Query: 103 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 282
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 283 MRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAP 456
M+++++ H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP
Sbjct: 61 MKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120
Query: 457 LSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML 636
+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180
Query: 637 NISPFSYGLVVKQVYDSGTIFAPEILDIKPXDL 735
I PFSYGLVV+ VYD+G++F+PE+LD+ L
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQL 213
Score = 36.7 bits (81), Expect = 0.018
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 723 TRXSPVAKFQAGVANVAALSLAIGYPTIASAP 818
T V KF +G++ V +L+LA+ YPT+A+AP
Sbjct: 209 TEDQLVEKFASGISMVTSLALAVSYPTLAAAP 240
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 240 bits (587), Expect = 9e-64
Identities = 117/208 (56%), Positives = 153/208 (73%), Gaps = 2/208 (0%)
Frame = +1
Query: 118 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI 297
KA K Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM++++
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66
Query: 298 KDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVI 471
+ H D N A LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+
Sbjct: 67 RIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVV 126
Query: 472 PAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPF 651
NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PF
Sbjct: 127 QPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPF 186
Query: 652 SYGLVVKQVYDSGTIFAPEILDIKPXDL 735
SYGLVV+ VYD+G++F PE+L++ DL
Sbjct: 187 SYGLVVESVYDNGSVFNPEVLNLTEDDL 214
Score = 41.1 bits (92), Expect = 9e-04
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 723 TRXSPVAKFQAGVANVAALSLAIGYPTIASAP 818
T V KF AGV+ + ALSLAI YPT+A+AP
Sbjct: 210 TEDDLVEKFAAGVSMITALSLAISYPTVAAAP 241
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 46.8 bits (106), Expect = 2e-05
Identities = 33/174 (18%), Positives = 80/174 (45%), Gaps = 3/174 (1%)
Frame = +1
Query: 151 IIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNN--PA 324
I + +++Y ++ +N+ + + ++ R R + +G N +M+ A+ ++
Sbjct: 30 IREAVEKYSSVYVFSFENMRNIKFKEFRQQFRHNGKFFLGSNKVMQVALGRSAEDELRSG 89
Query: 325 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG-LGPE 501
+ K+ ++G+ G + T EV + +R G+IA +V + E
Sbjct: 90 IYKVSKLLRGDTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIAVETVELKEGPLEQFTHE 149
Query: 502 KTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGL 663
+ L +P +++KGT+E++ D + + G ++ A +L +L + ++ L
Sbjct: 150 MEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKL 203
>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
family protein predicted proteins, Arabidopsis thaliana
; contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 411
Score = 32.3 bits (70), Expect = 0.40
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Frame = +2
Query: 311 TTIQPSRNCC---HTSRATLASCSPAETSLRSVTNCWRTK-SRLQL-VPVPLPHCQSSFP 475
++IQP RN +S + +S S ++ +SV + R++ S QL V + +P P
Sbjct: 5 SSIQPPRNFVLAKDSSTGSSSSSSSSQVKEQSVEDVSRSQPSGSQLDVSIQIP------P 58
Query: 476 PTTPASVQRKPLSSKLFPSLPKFQ-RVLLKSSTMYTS*SPVTRLELLKPPFSTC 634
TP+ + LS K SLP ++ R+LL S TS P+ + P + C
Sbjct: 59 KPTPSLGILRNLSLKRKASLPNYERRLLLSPSVSETSEKPLVASPITSPYWKRC 112
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 32.3 bits (70), Expect = 0.40
Identities = 42/137 (30%), Positives = 57/137 (41%), Gaps = 4/137 (2%)
Frame = +2
Query: 224 SRSVSRYVAPVSCSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVT 403
SRS SR P S T ++P T + SR+ TSRATL + ++ T
Sbjct: 153 SRSTSRPATPTRRSTTPTTSTSRPVTTRASN---SRSSTPTSRATLTAARATTSTAAPRT 209
Query: 404 NCWRTKSRLQLVPV---PLPHCQSSFPPTT-PASVQRKPLSSKLFPSLPKFQRVLLKSST 571
+ S P P P SS P + PA+ R+P S+ PS+ V K+ +
Sbjct: 210 TTTSSGSARSATPTRSNPRPSSASSKKPVSRPATPTRRP-STPTGPSI-----VSSKAPS 263
Query: 572 MYTS*SPVTRLELLKPP 622
TS SP L K P
Sbjct: 264 RGTSPSPTVN-SLSKAP 279
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/61 (34%), Positives = 24/61 (39%)
Frame = +2
Query: 440 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLKSSTMYTS*SPVTRLELLKP 619
P PL SS PP P+S LS L PS P S++ S P L P
Sbjct: 58 PPPLSLSPSSPPPPPPSSSPLSSLSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSP 117
Query: 620 P 622
P
Sbjct: 118 P 118
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +1
Query: 301 DHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLENKVQAPARPGAIAPLSVVIPA 477
D + +P + H KGNV + D KLL+ VQ + G+ + P
Sbjct: 31 DFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPG 90
Query: 478 HNTGLGPEK 504
H+ G+G +K
Sbjct: 91 HSPGVGHKK 99
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 313 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 411
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At1g33410.1 68414.m04136 expressed protein
Length = 1459
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 212 RNRCSRSVSRYVAPVSCSW--EKTL*CAKPSKTTWTTIQPSRNCC 340
RN S +V R + V S EKT C++ + W +Q R CC
Sbjct: 823 RNGQSDAVERILVVVEASLRGEKTFGCSQDTSGDWCLLQHLRGCC 867
>At5g04470.1 68418.m00445 expressed protein
Length = 127
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 446 PLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLK 562
P P Q PP+TP+S+ + KL SL K++ ++ K
Sbjct: 51 PPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYEIIVNK 89
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 29.1 bits (62), Expect = 3.7
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Frame = -3
Query: 626 RRVASEAPTLSPGFKMCTSLMISIVPFEILVGMERAWKKEVFSGPRPVLWAGMTTDNGAM 447
RR + + G + + M + + VG R K++ G P+L +G T GA
Sbjct: 244 RRTDTSNTSTQTGLQRTEAQMAANRALSLAVG-NRLPSKKLAVGMTPMLSSG--TIKGAQ 300
Query: 446 APGRAGAWTLFSN--------SLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLL 312
A G + TL +LSR +T P ++ + GNS SRA L+
Sbjct: 301 ANGASSGSTLQGQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSRADLM 353
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.3 bits (60), Expect = 6.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 262 ARYWSHVARYGSAASVASPRYRH 194
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
domain-containing protein similarity to
TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -3
Query: 707 SGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPFEILVGM 528
+G+ PE+Y+ + PYE E + R +++ P +P + L+ + EI G
Sbjct: 371 NGSNEAPEAYSPMDISPYEETE---VCREFSADIPPTAPNYLFDAELVAATERMEINEGD 427
Query: 527 E 525
E
Sbjct: 428 E 428
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -3
Query: 464 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 351
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 573 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 466
IVD N N R K++ E GFL+ GV GG +
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEE 137
>At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 573 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 466
IVD N N R K++ E GFL+ GV GG +
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEE 137
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,625,020
Number of Sequences: 28952
Number of extensions: 452680
Number of successful extensions: 1333
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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