Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N10
         (929 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14642| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.11 
SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_58175| Best HMM Match : Arm (HMM E-Value=0)                         29   5.4  
SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)           29   7.1  
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)              28   9.4  

>SB_14642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 34.7 bits (76), Expect = 0.11
 Identities = 25/78 (32%), Positives = 36/78 (46%)
 Frame = +3

Query: 24  GNS*DLILVSSSETVTIQNVFQGCCYPAALLXMRERSSFYASWLRREVSDHQPIFKVSPT 203
           G S D   ++ S+ VT+  +FQG   P A L M ++S  Y S              V   
Sbjct: 297 GGSRDKAAIAYSQAVTVTAIFQGAGPPVAGL-MADQSGSYTSAFYMSGIVLLVAAAVRLV 355

Query: 204 PSRYSRLCHLGQGNGGRE 257
           P+  S+L H+ QG+G  E
Sbjct: 356 PTCISKLRHIKQGSGAEE 373


>SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 90  GCCYPAALLXMRERSSFYASWLRREVSDHQPIFKVSPTP 206
           GC  P  ++  R   S+ A +  REV +H+    V  TP
Sbjct: 360 GCAVPVNIVRNRSDGSYVARFTPREVGEHRITVMVGATP 398


>SB_58175| Best HMM Match : Arm (HMM E-Value=0)
          Length = 1472

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 142  MPPGYAEKYPITSQFSRSVRHPRDIHD 222
            +PPG   + P T+Q   SVRH R + D
Sbjct: 1368 LPPGERRRRPHTTQSLPSVRHARSVRD 1394


>SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)
          Length = 725

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 155 TQRSIRSPANFQGQSDTLAIFTTLSLGTGKWGEGRSSGLWERATXDFLVXVV 310
           T+ +  +PA   G   ++   TTL+L      + RSSG +  A+  FL  +V
Sbjct: 434 TRSATYAPAIMSGCGTSIMFVTTLALAAELVDQDRSSGAFVMASMSFLSKIV 485


>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
          Length = 1325

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 127 NAQVSMPPGYAEKYPITSQFSRSVRHPRDI 216
           NA +S PP Y  +  + ++F  +  HPR I
Sbjct: 264 NAFISYPPAYFTQRTLLARFQMNTSHPRKI 293


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,930,193
Number of Sequences: 59808
Number of extensions: 386320
Number of successful extensions: 807
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2705204627
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)