Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_N09
(875 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 146 6e-34
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 142 8e-33
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 140 3e-32
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 130 6e-29
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 126 1e-27
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 123 5e-27
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 119 1e-25
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 111 3e-23
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 104 3e-21
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 102 1e-20
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 81 4e-14
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 76 1e-12
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 74 6e-12
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 71 4e-11
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 67 6e-10
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 62 2e-08
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 61 3e-08
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 60 7e-08
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 58 4e-07
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 54 4e-06
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 52 2e-05
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 50 6e-05
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 48 4e-04
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 47 5e-04
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 47 5e-04
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 47 5e-04
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 47 7e-04
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 46 0.001
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 43 0.012
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 40 0.063
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 40 0.083
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 38 0.25
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 36 1.0
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 35 2.4
UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1; ... 33 7.2
UniRef50_Q9YYP6 Cluster: Putative uncharacterized protein RTR4; ... 33 9.5
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 9.5
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 146 bits (354), Expect = 6e-34
Identities = 69/80 (86%), Positives = 72/80 (90%)
Frame = +3
Query: 72 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 252 VLKIVKQRLIKVDGKVRD*P 311
V KIV QRL+KVDGKVR P
Sbjct: 61 VTKIVMQRLVKVDGKVRTDP 80
Score = 104 bits (249), Expect = 3e-21
Identities = 57/112 (50%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Frame = +1
Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGT 471
GK+ TDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G
Sbjct: 74 GKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGA 133
Query: 472 *XCSVLGNA*WPHHPLXRPTYQSXRXHPVKHCQL----XKIMDXIKFESGEL 615
L H Y H Q+ KI D IKF+SG L
Sbjct: 134 KGVPFLVT-----HDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNL 180
Score = 62.9 bits (146), Expect = 1e-08
Identities = 35/72 (48%), Positives = 43/72 (59%)
Frame = +2
Query: 479 VPYLVTHDGRTIRXPDPLIKVXXSIQLNIANYXKLWTXSSLSLGNLCXIPGSX*LGAXWA 658
VP+LVTHDGRTIR PDPLI S+Q++IA+ K+ GNLC I G LG
Sbjct: 136 VPFLVTHDGRTIRYPDPLIHANDSVQVDIAS-GKITDYIKFDSGNLCMITGGRNLGR--V 192
Query: 659 PIXVPRKKXPGS 694
V R++ PGS
Sbjct: 193 GTVVNRERHPGS 204
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 142 bits (345), Expect = 8e-33
Identities = 65/77 (84%), Positives = 70/77 (90%)
Frame = +3
Query: 72 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 252 VLKIVKQRLIKVDGKVR 302
V KI QR IK+DGKVR
Sbjct: 61 VKKICMQRFIKIDGKVR 77
Score = 104 bits (249), Expect = 3e-21
Identities = 45/63 (71%), Positives = 54/63 (85%)
Frame = +1
Query: 283 RLMGKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 462
++ GK+ TD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++
Sbjct: 71 KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIF 130
Query: 463 TGT 471
GT
Sbjct: 131 VGT 133
Score = 59.7 bits (138), Expect = 1e-07
Identities = 31/72 (43%), Positives = 42/72 (58%)
Frame = +2
Query: 479 VPYLVTHDGRTIRXPDPLIKVXXSIQLNIANYXKLWTXSSLSLGNLCXIPGSX*LGAXWA 658
+P+LVTHD RTIR PDPLIKV +IQ+++ K+ GNLC + G LG
Sbjct: 136 IPHLVTHDARTIRYPDPLIKVNDTIQIDLET-GKITDFIKFDTGNLCMVTGGANLGR--I 192
Query: 659 PIXVPRKKXPGS 694
+ R++ PGS
Sbjct: 193 GVITNRERHPGS 204
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 140 bits (340), Expect = 3e-32
Identities = 64/76 (84%), Positives = 69/76 (90%)
Frame = +3
Query: 75 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 254
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 255 LKIVKQRLIKVDGKVR 302
KI QR IK+DGKVR
Sbjct: 62 KKICMQRFIKIDGKVR 77
Score = 83.0 bits (196), Expect(2) = 2e-16
Identities = 37/50 (74%), Positives = 43/50 (86%)
Frame = +1
Query: 283 RLMGKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 432
++ GK+ TD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 71 KIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 54.4 bits (125), Expect = 4e-06
Identities = 27/72 (37%), Positives = 42/72 (58%)
Frame = +2
Query: 479 VPYLVTHDGRTIRXPDPLIKVXXSIQLNIANYXKLWTXSSLSLGNLCXIPGSX*LGAXWA 658
+P+LVTHD RTIR PDPLIKV ++++++ + K+ N+C + G LG
Sbjct: 168 IPHLVTHDARTIRYPDPLIKVNDTVRIDL-DTGKITDFIKFDTSNMCMVTGGANLGR--I 224
Query: 659 PIXVPRKKXPGS 694
+ R++ PGS
Sbjct: 225 GVITNRERHPGS 236
Score = 25.8 bits (54), Expect(2) = 2e-16
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 430 KYKLCKVKRVATGT 471
+YKLCKVK++ GT
Sbjct: 152 QYKLCKVKKILIGT 165
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 130 bits (313), Expect = 6e-29
Identities = 59/77 (76%), Positives = 67/77 (87%)
Frame = +3
Query: 72 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 252 VLKIVKQRLIKVDGKVR 302
V+ I+ QR I+VDGKVR
Sbjct: 61 VISILMQRHIQVDGKVR 77
Score = 92.7 bits (220), Expect = 1e-17
Identities = 52/114 (45%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Frame = +1
Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGT 471
GK+ TD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G
Sbjct: 74 GKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQ 133
Query: 472 *XCSVLGNA*WPHHPLXRPTYQSXRXHPVK-HCQLXKIMDXIKFESGELVXDPG 630
L + + P +K + KI++ IKF+ G +V G
Sbjct: 134 KGIPYLNT--YDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTG 185
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 126 bits (303), Expect = 1e-27
Identities = 57/75 (76%), Positives = 63/75 (84%)
Frame = +3
Query: 72 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 252 VLKIVKQRLIKVDGK 296
V KI Q IK+DGK
Sbjct: 61 VKKIRMQHFIKMDGK 75
Score = 57.6 bits (133), Expect = 4e-07
Identities = 30/72 (41%), Positives = 41/72 (56%)
Frame = +2
Query: 479 VPYLVTHDGRTIRXPDPLIKVXXSIQLNIANYXKLWTXSSLSLGNLCXIPGSX*LGAXWA 658
+P+LVTHD RTIR PDPLIK+ +IQ+++ K+ GNLC + G LG
Sbjct: 108 IPHLVTHDARTIRYPDPLIKMNDTIQIDLET-GKITDFFKFDTGNLCMVTGGTNLGR--I 164
Query: 659 PIXVPRKKXPGS 694
+ R+ PGS
Sbjct: 165 GVITNRENHPGS 176
Score = 51.2 bits (117), Expect = 3e-05
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +1
Query: 382 DVKGRFTIHRITPEEAKYKLCKVKRVATGT 471
D KGRF +HRITPEEAKYKL KV+++ GT
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGT 105
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 123 bits (297), Expect = 5e-27
Identities = 53/77 (68%), Positives = 62/77 (80%)
Frame = +3
Query: 72 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Query: 252 VLKIVKQRLIKVDGKVR 302
V IVK R IK+DGK+R
Sbjct: 61 VTMIVKNRTIKIDGKIR 77
Score = 75.4 bits (177), Expect = 2e-12
Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Frame = +1
Query: 271 NAS*RLMGKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 450
N + ++ GK+ TD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+
Sbjct: 67 NRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKI 126
Query: 451 -KRV-ATGT*XCSVLGNA*WPHHPLXRPTYQSXRXHPVKHCQLXKIMDXIKFESG 609
KRV TG V + +P P Q+ + + + KI+D +KF+ G
Sbjct: 127 EKRVLGTGAIPYIVTHDGRTIRYP--HPELQANDTIKL-NLETGKIVDFVKFDIG 178
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 119 bits (286), Expect = 1e-25
Identities = 60/89 (67%), Positives = 69/89 (77%)
Frame = +3
Query: 63 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 242
++ +A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALT
Sbjct: 9 ITAVAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALT 67
Query: 243 GNEVLKIVKQRLIKVDGKVRD*PYLSCWI 329
G+EV KI Q IKVDGK+R L WI
Sbjct: 68 GDEVKKICMQWFIKVDGKIRTDNNLPYWI 96
Score = 71.7 bits (168), Expect = 2e-11
Identities = 31/56 (55%), Positives = 40/56 (71%)
Frame = +1
Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 459
GK+ TD P MDV+SI+K E F LIY + RF +HRITPEE KYKLCK++++
Sbjct: 84 GKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKI 139
Score = 47.2 bits (107), Expect = 5e-04
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +2
Query: 479 VPYLVTHDGRTIRXPDPLIKVXXSIQLNIANYXKLWTXSSLSLGNLCXIPGSX*LGAXWA 658
+P+LV HD T+R PD LIKV +IQ+++ K+ T GNLC + G G W
Sbjct: 146 IPHLVIHDIHTVRHPDSLIKVNDTIQIDLET-GKI-TALKFDTGNLCLVTG----GGNWG 199
Query: 659 PIXV--PRKKXPGSLXXF 706
I V R++ P S F
Sbjct: 200 RIGVITNRERHPVSFDTF 217
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 111 bits (266), Expect = 3e-23
Identities = 55/86 (63%), Positives = 63/86 (73%)
Frame = +3
Query: 45 SFSI*YLSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNR 224
SFS L M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+R
Sbjct: 6 SFSWSVLFLMPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDR 65
Query: 225 LKYALTGNEVLKIVKQRLIKVDGKVR 302
LKYALT E + IVK+RL+KVDGKVR
Sbjct: 66 LKYALTAKEAVAIVKRRLVKVDGKVR 91
Score = 70.5 bits (165), Expect = 5e-11
Identities = 30/59 (50%), Positives = 41/59 (69%)
Frame = +1
Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 468
GK+ T+ YP G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V + G
Sbjct: 88 GKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIG 146
Score = 37.9 bits (84), Expect = 0.33
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +2
Query: 479 VPYLVTHDGRTIRXPDPLIKVXXSIQLNI 565
+P++VTHDGRTI DP ++V +++ NI
Sbjct: 150 IPHVVTHDGRTISYVDPSVRVHDALKFNI 178
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 104 bits (250), Expect = 3e-21
Identities = 47/77 (61%), Positives = 60/77 (77%)
Frame = +3
Query: 72 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60
Query: 252 VLKIVKQRLIKVDGKVR 302
L I+K+ I VDGKVR
Sbjct: 61 SLNILKKNEIYVDGKVR 77
Score = 70.9 bits (166), Expect = 4e-11
Identities = 31/60 (51%), Positives = 44/60 (73%)
Frame = +1
Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGT 471
GK+ D +PAG MDV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G+
Sbjct: 74 GKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGS 133
Score = 49.6 bits (113), Expect = 1e-04
Identities = 24/49 (48%), Positives = 33/49 (67%)
Frame = +2
Query: 479 VPYLVTHDGRTIRXPDPLIKVXXSIQLNIANYXKLWTXSSLSLGNLCXI 625
+PY+VTHDGRTIR P+ LIK SI L++ N K+ S+G+LC +
Sbjct: 136 IPYIVTHDGRTIRFPNLLIKSNDSIVLDLLN-NKVIDFIKFSIGSLCVV 183
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 102 bits (245), Expect = 1e-20
Identities = 47/72 (65%), Positives = 54/72 (75%)
Frame = +3
Query: 87 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 266
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 267 KQRLIKVDGKVR 302
+Q L+ VD R
Sbjct: 63 RQGLVHVDNHPR 74
Score = 65.7 bits (153), Expect = 1e-09
Identities = 31/55 (56%), Positives = 38/55 (69%)
Frame = +1
Query: 307 DPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGT 471
D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV + T T
Sbjct: 76 DGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTAT 130
Score = 33.5 bits (73), Expect = 7.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 479 VPYLVTHDGRTIRXPDPLIKVXXSIQLNI 565
VP VTHDG IR PDP + +I N+
Sbjct: 133 VPVAVTHDGHRIRYPDPHTSIGDTIVYNV 161
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 81.0 bits (191), Expect = 4e-14
Identities = 37/77 (48%), Positives = 51/77 (66%)
Frame = +3
Query: 72 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKE 60
Query: 252 VLKIVKQRLIKVDGKVR 302
+ I+ ++ IKV+G+VR
Sbjct: 61 LSIILAEKNIKVNGRVR 77
Score = 64.5 bits (150), Expect = 3e-09
Identities = 28/58 (48%), Positives = 42/58 (72%)
Frame = +1
Query: 283 RLMGKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 456
++ G++ T+ +P G DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV +
Sbjct: 71 KVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTK 128
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 76.2 bits (179), Expect = 1e-12
Identities = 56/129 (43%), Positives = 69/129 (53%), Gaps = 31/129 (24%)
Frame = +3
Query: 9 YYXLTIGNP*DLSFSI*YLSNMARGPKKHLKRLNAPKAWMLD------------------ 134
Y ++I P SF I ARGPKKHLKR+NAPK+WML+
Sbjct: 64 YKLISITVPHFFSFEI---YKKARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKN 120
Query: 135 -------KLGGVY----APRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQR 275
KL +Y A RPS GPHKLRE LPL + L+ RL YAL G +V I+ K++
Sbjct: 121 DFITTIPKLKFIYFKKQATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQ 180
Query: 276 LIKVDGKVR 302
+ VDGKVR
Sbjct: 181 NVFVDGKVR 189
Score = 72.5 bits (170), Expect = 1e-11
Identities = 33/59 (55%), Positives = 41/59 (69%)
Frame = +1
Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 468
GK+ D YP G MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A G
Sbjct: 186 GKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIG 244
Score = 51.6 bits (118), Expect = 3e-05
Identities = 22/52 (42%), Positives = 34/52 (65%)
Frame = +2
Query: 470 PXNVPYLVTHDGRTIRXPDPLIKVXXSIQLNIANYXKLWTXSSLSLGNLCXI 625
P +PY+VTHD RTIR P+P IK+ +++ ++ N K+ + L GN+C I
Sbjct: 245 PNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVN-NKIENFAHLESGNVCYI 295
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 73.7 bits (173), Expect = 6e-12
Identities = 38/78 (48%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +3
Query: 81 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 257
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 258 KIVKQRLIKVDGKVRD*P 311
KI+ + I VDG VR P
Sbjct: 67 KIITRGEIYVDGVVRKEP 84
Score = 47.6 bits (108), Expect = 4e-04
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +1
Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 453
G + +P +P G MDVV I +T + +R++ + R + I+ EEA+ K+C++K
Sbjct: 78 GVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIK 131
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 70.9 bits (166), Expect = 4e-11
Identities = 33/75 (44%), Positives = 46/75 (61%)
Frame = +3
Query: 78 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 257
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 258 KIVKQRLIKVDGKVR 302
KI++ I +DG R
Sbjct: 64 KIIQTGKILIDGLKR 78
Score = 38.7 bits (86), Expect = 0.19
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +1
Query: 316 YPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 450
+PAG MDV+SI + +E + +++D GR ++ + ++ KLCK+
Sbjct: 83 HPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKI 125
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 66.9 bits (156), Expect = 6e-10
Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = +3
Query: 93 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 269
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 270 QRLIKVDGKVR 302
+ +KVDG VR
Sbjct: 63 RGYVKVDGVVR 73
Score = 40.7 bits (91), Expect = 0.047
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +1
Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 453
G + D +P G MDV+ I T E++R++ D + + I+ EEA KL +V+
Sbjct: 70 GVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVE 123
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 61.7 bits (143), Expect = 2e-08
Identities = 27/70 (38%), Positives = 42/70 (60%)
Frame = +3
Query: 93 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 272
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 273 RLIKVDGKVR 302
+KVDGKVR
Sbjct: 63 GYVKVDGKVR 72
Score = 42.3 bits (95), Expect = 0.016
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +1
Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 453
GK+ D YP G MDV+ + NE +R+I D RI EA K+C+++
Sbjct: 69 GKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIE 122
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 61.3 bits (142), Expect = 3e-08
Identities = 29/79 (36%), Positives = 45/79 (56%)
Frame = +3
Query: 63 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 242
+ +G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T
Sbjct: 1 MGRKVKGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKT 60
Query: 243 GNEVLKIVKQRLIKVDGKV 299
E +I+ R+I+VDG+V
Sbjct: 61 MKEARRILASRVIEVDGRV 79
Score = 45.2 bits (102), Expect = 0.002
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +1
Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 465
G++ TD +P G MDV+ I + +R++ D + I PEEA YKL +++R T
Sbjct: 77 GRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMT 134
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 60.1 bits (139), Expect = 7e-08
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +3
Query: 72 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGN 248
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60
Query: 249 EVLKIVKQRLIKVDGKVR 302
E K++ + +VDG VR
Sbjct: 61 EARKLISEGHFRVDGVVR 78
Score = 41.9 bits (94), Expect = 0.021
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +1
Query: 259 KL*NNAS*RLMGKLGTDPTYPAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKY 435
KL + R+ G + D +P GFMDV+ + T E FR++ Y VK F +H I EE
Sbjct: 64 KLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDL 122
Query: 436 KLCKVKRVAT 465
K +++ T
Sbjct: 123 KPVRIENKTT 132
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 57.6 bits (133), Expect = 4e-07
Identities = 27/70 (38%), Positives = 41/70 (58%)
Frame = +3
Query: 93 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 272
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 273 RLIKVDGKVR 302
+ VDGKVR
Sbjct: 65 GKVLVDGKVR 74
Score = 37.5 bits (83), Expect = 0.44
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 450
GK+ D Y G D +SI N +R++ + G+F H + +A K+CK+
Sbjct: 71 GKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKI 121
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 54.4 bits (125), Expect = 4e-06
Identities = 25/73 (34%), Positives = 37/73 (50%)
Frame = +3
Query: 81 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 260
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 261 IVKQRLIKVDGKV 299
I+ + VDG+V
Sbjct: 65 IINSGNVLVDGRV 77
Score = 53.2 bits (122), Expect = 8e-06
Identities = 24/58 (41%), Positives = 38/58 (65%)
Frame = +1
Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 465
G++ D +P GFMD++ I KT E++R++ D KGR +++I EE KLCK+ +T
Sbjct: 75 GRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKST 130
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 52.0 bits (119), Expect = 2e-05
Identities = 22/69 (31%), Positives = 39/69 (56%)
Frame = +3
Query: 93 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 272
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 273 RLIKVDGKV 299
R + VDG++
Sbjct: 65 RQVLVDGRI 73
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 50.4 bits (115), Expect = 6e-05
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +3
Query: 99 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 278
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 279 IKVDGKV 299
+ ++G +
Sbjct: 64 VLLNGHI 70
Score = 35.1 bits (77), Expect = 2.4
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +1
Query: 286 LMGKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 465
L G + TD D++S K ++ + ++ D KGR + I+ + AK +L KV T
Sbjct: 66 LNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKTT 125
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 47.6 bits (108), Expect = 4e-04
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +1
Query: 268 NNAS*RLMGKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 447
NN ++ G++ D +P GFMDV+SI+ + ++YD KG+ I + P KL K
Sbjct: 63 NNNMVKVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFK 122
Query: 448 -VKRVATGT 471
VK+ GT
Sbjct: 123 VVKKTIIGT 131
Score = 37.1 bits (82), Expect = 0.58
Identities = 16/67 (23%), Positives = 35/67 (52%)
Frame = +3
Query: 99 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 278
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 279 IKVDGKV 299
+KVDG++
Sbjct: 67 VKVDGRI 73
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 47.2 bits (107), Expect = 5e-04
Identities = 25/69 (36%), Positives = 40/69 (57%)
Frame = +3
Query: 90 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 269
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILH 61
Query: 270 QRLIKVDGK 296
QR + V+G+
Sbjct: 62 QRDVLVNGR 70
Score = 42.3 bits (95), Expect = 0.016
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +1
Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 465
G+ D G D+VSI K + +R+ DVKG I E AK +LCK++ T
Sbjct: 69 GRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTT 126
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 47.2 bits (107), Expect = 5e-04
Identities = 26/70 (37%), Positives = 36/70 (51%)
Frame = +3
Query: 93 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 272
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 273 RLIKVDGKVR 302
+ VDGKVR
Sbjct: 63 GKVLVDGKVR 72
Score = 40.7 bits (91), Expect = 0.047
Identities = 22/58 (37%), Positives = 29/58 (50%)
Frame = +1
Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 465
GK+ D YP G MDVV I + R+I D T I+ E+AKYK ++ T
Sbjct: 69 GKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTT 126
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 47.2 bits (107), Expect = 5e-04
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 87 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 263
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 264 VKQRLIKVDGK 296
+ + VDG+
Sbjct: 66 LNNGKVLVDGR 76
Score = 43.6 bits (98), Expect = 0.007
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +1
Query: 268 NNAS*RLMGKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 447
NN + G+ D +P G DV++I + NE +R++ D +G+ + +I EEA K K
Sbjct: 67 NNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGK 126
Query: 448 VKR 456
+ R
Sbjct: 127 IIR 129
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 46.8 bits (106), Expect = 7e-04
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +3
Query: 93 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 272
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 273 RLIKVDG 293
+ VDG
Sbjct: 63 GKVLVDG 69
Score = 41.5 bits (93), Expect = 0.027
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +1
Query: 307 DPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 465
D +P G DV+++ NE +R++ D KGR ++++ E KLC++ T
Sbjct: 74 DLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTT 125
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 46.0 bits (104), Expect = 0.001
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +3
Query: 93 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 272
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 273 RLIKVDGKVR 302
+ VDG R
Sbjct: 64 GNVLVDGVAR 73
Score = 35.1 bits (77), Expect = 2.4
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +1
Query: 307 DPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 453
D +P G MD+++I N +R++ D K R ++++ A KLC+++
Sbjct: 75 DLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIE 122
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 42.7 bits (96), Expect = 0.012
Identities = 23/75 (30%), Positives = 39/75 (52%)
Frame = +3
Query: 72 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
MA+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60
Query: 252 VLKIVKQRLIKVDGK 296
K+VK + V+GK
Sbjct: 61 AQKVVKTGFLYVNGK 75
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 40.3 bits (90), Expect = 0.063
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +3
Query: 93 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 272
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 273 RLIKVDGK 296
+ ++GK
Sbjct: 63 DNVLINGK 70
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 39.9 bits (89), Expect = 0.083
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +3
Query: 99 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 278
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 279 IKVDGKV 299
+ VDGKV
Sbjct: 66 VMVDGKV 72
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 38.3 bits (85), Expect = 0.25
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 453
GK + + GFMDV+ I E +R++Y+ +G + + T E A KL KV+
Sbjct: 70 GKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVR 121
Score = 35.5 bits (78), Expect = 1.8
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 99 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 278
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 279 IKVDGK 296
+KVDGK
Sbjct: 66 VKVDGK 71
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 36.3 bits (80), Expect = 1.0
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = +3
Query: 90 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 269
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 270 QRLIKVDGKVR 302
++VDG R
Sbjct: 68 SGNVEVDGVKR 78
>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
tuberculosis complex|Rep: PROBABLE OXIDASE -
Mycobacterium bovis
Length = 504
Score = 35.1 bits (77), Expect = 2.4
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -3
Query: 204 PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAPCWTSI 58
PG RAT GD + VSV T+R PTS+ W ++ N G P +I
Sbjct: 93 PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRNDMDGTEPATANI 140
>UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1;
Pedobacter sp. BAL39|Rep: Putative uncharacterized
protein - Pedobacter sp. BAL39
Length = 195
Score = 33.5 bits (73), Expect = 7.2
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -2
Query: 259 FRTSFPVKAYFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKRFK---CF 89
F F KA FR+ +RK+ G+H+ +D A+T PSL H KR++ F
Sbjct: 11 FLGRFFFKARFRKLIRKL--GRHTEVYLVDIDNTLAHTWPSLQQRHYSAENKRYRSLPIF 68
Query: 88 LGPRAML 68
+G R+ L
Sbjct: 69 IGMRSYL 75
>UniRef50_Q9YYP6 Cluster: Putative uncharacterized protein RTR4;
n=1; Fowl adenovirus 8|Rep: Putative uncharacterized
protein RTR4 - Avian adenovirus 8 (strain ATCC A-2A)
(FAdV-8) (Fowl adenovirus 8)
Length = 285
Score = 33.1 bits (72), Expect = 9.5
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 404 STVSPLR-RLSTSCVKSSVWRPEPXNVPY--LVTHDGRTIRXPDP 529
ST +P R T+C++SS WRP P LV+ GR+I P P
Sbjct: 20 STGAPCRPETDTACLRSSPWRPRAATAPAPDLVSGAGRSIINPAP 64
Score = 33.1 bits (72), Expect = 9.5
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 404 STVSPLR-RLSTSCVKSSVWRPEPXNVPY--LVTHDGRTIRXPDP 529
ST +P R T+C++SS WRP P LV+ GR+I P P
Sbjct: 65 STGAPCRPETDTACLRSSPWRPRAATAPAPDLVSGAGRSIINPAP 109
Score = 33.1 bits (72), Expect = 9.5
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 404 STVSPLR-RLSTSCVKSSVWRPEPXNVPY--LVTHDGRTIRXPDP 529
ST +P R T+C++SS WRP P LV+ GR+I P P
Sbjct: 110 STGAPCRPETDTACLRSSPWRPRAATAPAPDLVSGAGRSIINPAP 154
Score = 33.1 bits (72), Expect = 9.5
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 404 STVSPLR-RLSTSCVKSSVWRPEPXNVPY--LVTHDGRTIRXPDP 529
ST +P R T+C++SS WRP P LV+ GR+I P P
Sbjct: 155 STGAPCRPETDTACLRSSPWRPRAATAPAPDLVSGAGRSIINPAP 199
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 33.1 bits (72), Expect = 9.5
Identities = 15/60 (25%), Positives = 35/60 (58%)
Frame = +3
Query: 126 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRD 305
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L + + R+
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDILDRQRN 480
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 820,688,016
Number of Sequences: 1657284
Number of extensions: 16593379
Number of successful extensions: 40066
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 35930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39367
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 78292544701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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