Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N09
         (875 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   1.8  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   7.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   7.3  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 210 KSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 115
           K PG S     GD + + V  H     T++ W
Sbjct: 104 KMPGPSVEVCLGDEVIIDVVNHLSSDSTTIHW 135



 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 512 WCGHHALPSTEHX*VPVATRLTLH 441
           W GHH   S     VP  T+  +H
Sbjct: 135 WHGHHQKNSPYMDGVPFVTQCPIH 158


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -3

Query: 204 PGASTRATCGDRLTVSVHTHRQVCPTSMLW 115
           PG S +   GD++ + V  H +    ++ W
Sbjct: 172 PGPSIQVCEGDKVVIDVENHIEGNEVTLHW 201


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -3

Query: 204 PGASTRATCGDRLTVSVHTHRQVCPTSMLW 115
           PG S +   GD++ + V  H +    ++ W
Sbjct: 172 PGPSIQVCEGDKVVIDVENHIEGNEVTLHW 201


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,433
Number of Sequences: 336
Number of extensions: 3946
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)