Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N09
         (875 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             151   1e-36
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   6.5  
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)                      29   6.5  
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)                    28   8.6  
SB_7447| Best HMM Match : CHGN (HMM E-Value=0)                         28   8.6  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  151 bits (365), Expect = 1e-36
 Identities = 68/77 (88%), Positives = 72/77 (93%)
 Frame = +3

Query: 72  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
           MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G E
Sbjct: 425 MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEE 484

Query: 252 VLKIVKQRLIKVDGKVR 302
           V KIVKQRLIK+DGKVR
Sbjct: 485 VKKIVKQRLIKIDGKVR 501



 Score = 95.5 bits (227), Expect = 5e-20
 Identities = 43/62 (69%), Positives = 52/62 (83%)
 Frame = +1

Query: 283 RLMGKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVA 462
           ++ GK+ TD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV 
Sbjct: 495 KIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVD 554

Query: 463 TG 468
            G
Sbjct: 555 VG 556



 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 27/72 (37%), Positives = 38/72 (52%)
 Frame = +2

Query: 479 VPYLVTHDGRTIRXPDPLIKVXXSIQLNIANYXKLWTXSSLSLGNLCXIPGSX*LGAXWA 658
           VPY+VTHD RTIR PDP IKV  ++ ++I    K+        GN+  + G   +G    
Sbjct: 560 VPYIVTHDARTIRYPDPNIKVNDTVVIDIKT-GKVIDYIKFDTGNMAMVVGGRNMGR--V 616

Query: 659 PIXVPRKKXPGS 694
            +   R+K  GS
Sbjct: 617 GMVTHREKHAGS 628


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +2

Query: 215 EES--SEVCFDRKRSPENCE 268
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
          Length = 892

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 722 TPPGXXPXPPPKGXNXXXFQKXRXRGPQK 808
           +PP   P PPP   N    Q+ +  GPQ+
Sbjct: 719 SPPSSAPAPPPPQYNQASMQQLQYGGPQQ 747


>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
          Length = 203

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 214 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPRAMLDK 62
           RK +R     N++G ++GLG+  PP  + I     F K  K F  PR    K
Sbjct: 60  RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPRRSKQK 111


>SB_7447| Best HMM Match : CHGN (HMM E-Value=0)
          Length = 918

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 128 HPCFGSV*ALQMLLRASRHVGQVLNRERQILRI 30
           HP FG+   + ML++  RH+G   NR R  + +
Sbjct: 418 HPLFGAQYIMDMLMKYHRHIGH--NRRRMTVHV 448


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,392,184
Number of Sequences: 59808
Number of extensions: 515464
Number of successful extensions: 1075
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)