Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_N09
(875 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 130 2e-30
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 130 2e-30
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 130 2e-30
At4g10710.1 68417.m01751 transcriptional regulator-related simil... 31 1.0
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ... 29 4.1
At1g29760.1 68414.m03639 expressed protein 29 4.1
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 130 bits (313), Expect = 2e-30
Identities = 59/77 (76%), Positives = 67/77 (87%)
Frame = +3
Query: 72 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 252 VLKIVKQRLIKVDGKVR 302
V+ I+ QR I+VDGKVR
Sbjct: 61 VISILMQRHIQVDGKVR 77
Score = 93.5 bits (222), Expect = 2e-19
Identities = 52/114 (45%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Frame = +1
Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGT 471
GK+ TD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G
Sbjct: 74 GKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQ 133
Query: 472 *XCSVLGNA*WPHHPLXRPTYQSXRXHPVK-HCQLXKIMDXIKFESGELVXDPG 630
L + + P +K + KI++ IKF+ G +V G
Sbjct: 134 KGIPYLNT--YDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTG 185
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 130 bits (313), Expect = 2e-30
Identities = 59/77 (76%), Positives = 67/77 (87%)
Frame = +3
Query: 72 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 252 VLKIVKQRLIKVDGKVR 302
V+ I+ QR I+VDGKVR
Sbjct: 61 VISILMQRHIQVDGKVR 77
Score = 92.7 bits (220), Expect = 3e-19
Identities = 52/114 (45%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Frame = +1
Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGT 471
GK+ TD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G
Sbjct: 74 GKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQ 133
Query: 472 *XCSVLGNA*WPHHPLXRPTYQSXRXHPVK-HCQLXKIMDXIKFESGELVXDPG 630
L + + P +K + KI++ IKF+ G +V G
Sbjct: 134 KGIPYLNT--YDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTG 185
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 130 bits (313), Expect = 2e-30
Identities = 59/77 (76%), Positives = 67/77 (87%)
Frame = +3
Query: 72 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 252 VLKIVKQRLIKVDGKVR 302
V+ I+ QR I+VDGKVR
Sbjct: 61 VISILMQRHIQVDGKVR 77
Score = 92.7 bits (220), Expect = 3e-19
Identities = 52/114 (45%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Frame = +1
Query: 292 GKLGTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGT 471
GK+ TD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G
Sbjct: 74 GKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQ 133
Query: 472 *XCSVLGNA*WPHHPLXRPTYQSXRXHPVK-HCQLXKIMDXIKFESGELVXDPG 630
L + + P +K + KI++ IKF+ G +V G
Sbjct: 134 KGIPYLNT--YDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTG 185
>At4g10710.1 68417.m01751 transcriptional regulator-related similar
to chromatin-specific transcription elongation factor
FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
Length = 1074
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 196 KHSRNLWGPVDGLGAYTPPSLSNIHAL 116
KHS +LWG D L TPP+ ++ L
Sbjct: 44 KHSADLWGSADALAIATPPASDDLRYL 70
>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
putative / steroid 5-alpha-reductase, putative identical
to gi:1280611; contains a steroid 5-alpha reductase,
C-terminal domain
Length = 262
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 286 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 170
TF R C + P A +FL+ GKH+R WGP
Sbjct: 8 TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45
>At1g29760.1 68414.m03639 expressed protein
Length = 526
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 301 LTFPSTFMRRCFTIFRTSFPVKAYFRRFL 215
LTFP +R CF F F + RRFL
Sbjct: 197 LTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,620,445
Number of Sequences: 28952
Number of extensions: 371760
Number of successful extensions: 941
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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